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| author |  Axel Huebl <axel.huebl@plasma.ninja>
| 2022-02-16 16:30:57 -0800 |
|---|---|---|
| committer |  GitHub <noreply@github.com>
| 2022-02-16 16:30:57 -0800 |
| commit | a6f876a0f263510c0f1c52ae3e4f33fffa4095ea (patch) | |
| tree | 77d948635155d2e1b8429f796ca04bcc2385c825 | |
| parent | cc429657fc4414539b4fb42da947b831e94448a4 (diff) | |
| download | WarpX-a6f876a0f263510c0f1c52ae3e4f33fffa4095ea.tar.gz WarpX-a6f876a0f263510c0f1c52ae3e4f33fffa4095ea.tar.zst WarpX-a6f876a0f263510c0f1c52ae3e4f33fffa4095ea.zip | |
Lassen: Fix Chunked HDF5 with MPI (#2863)
Try to work-around segfaults with HDF5 when running on more than one node.
| -rw-r--r-- | Tools/machines/lassen-llnl/lassen.bsub | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/Tools/machines/lassen-llnl/lassen.bsub b/Tools/machines/lassen-llnl/lassen.bsub index 0fd2500c5..7575a05fd 100644 --- a/Tools/machines/lassen-llnl/lassen.bsub +++ b/Tools/machines/lassen-llnl/lassen.bsub @@ -18,5 +18,9 @@ #BSUB -o WarpXo.%J #BSUB -e WarpXe.%J +# Work-around OpenMPI bug with chunked HDF5 +# https://github.com/open-mpi/ompi/issues/7795 +export OMPI_MCA_io=ompio + export OMP_NUM_THREADS=1 jsrun -r 4 -a 1 -g 1 -c 7 -l GPU-CPU -d packed -b rs -M "-gpu" <path/to/executable> <input file> > output.txt |