add collider-relevant reduced diags (#4024)

* added collider reduced diags

* added test

* fixed xy_ave and xy_std

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* fixed usage of IntVect and removed print

* Set up automated CI test

To-do:
- Fix bug (erroneous arithmetic operation)
- Remove unused parameters from input file

* Fix warning: set mass only if WARPX_QED

* Use amrex::ParticleReal for mass

* Update Make.package to fix GNU Make build

* reduced_data.value() only once

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* Merge `development` into `coll_rel_red_diags`

* updated 3d beam test

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* updated 3d test

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* `m_write_header` instead of `m_IsNotRestart`

* added angles

* updated 3d beam test

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* added 3 particle test

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* added warning

* updated diags names

* updated analysis multiple particles

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* added positrons to test

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* Update CI test

* Reuse input file parser from Tools

* Apply suggestions from code review

* Apply suggestions from code review

* changed order of diags and added docs

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* Apply WarpX style conventions

* Fix CodeQL alerts

* assert in RZ and removed fine ref levs

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* Fix compilation in 2D

* Fix compilation in RZ

* Update Docs/source/usage/parameters.rst

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.cpp

Co-authored-by: Luca Fedeli <luca.fedeli.88@gmail.com>

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.cpp

Co-authored-by: Luca Fedeli <luca.fedeli.88@gmail.com>

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.H

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.H

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* minimized number of kernel launches and parallel ops

* updated constructor of ReduceDiags

* fixed based on comments

* updated docs: if QED not enable

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* fixed ReducedDiags constructor

* two passes instead of one for robusteness

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* fixed bugs

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* Fix 1D build (typo `wtot` instead of `w_tot`)

* refixed compile in RZ

* check io process in chi_ave computation

* updated test

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* Temporary fix: remove IOProcessor

* Update Source/Diagnostics/ReducedDiags/ColliderRelevant.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Apply suggestions from code review

* Remove `Debug` compilation mode from CI test

* CI test analysis: check all particles have same charge

* Use `m_beam_name` instead of `species_names`

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Luca Fedeli <luca.fedeli.88@gmail.com>

1 files changed, 0 insertions, 0 deletions

diff --git a/Tools/Algorithms/input_file_parser.py b/Tools/Parser/input_file_parser.py
index 0ab134f62..0ab134f62 100644
--- a/Tools/Algorithms/input_file_parser.py
+++ b/Tools/Parser/input_file_parser.py