diff options
Diffstat (limited to 'Examples')
64 files changed, 292 insertions, 117 deletions
diff --git a/Examples/Modules/ParticleBoundaryProcess/inputs_absorption b/Examples/Modules/ParticleBoundaryProcess/inputs_absorption index 25d41ff7b..5da6720ef 100644 --- a/Examples/Modules/ParticleBoundaryProcess/inputs_absorption +++ b/Examples/Modules/ParticleBoundaryProcess/inputs_absorption @@ -5,12 +5,14 @@ amr.max_level = 0 max_step = 60 geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -125.e-6 -125.e-6 -149.e-6 geometry.prob_hi = 125.e-6 125.e-6 1.e-6 -warpx.do_pml = 0 warpx.cfl = 0.99 +# Domain Boundary condition +boundary.field_lo = pec pec pec +boundary.field_hi = pec pec pec + # Use parser to build EB # Note that for amrex EB implicit function, >0 is covered, =0 is boundary and <0 is regular. # This sets the region from -12.5e-6 < x < 12.5e-6, -12.5e-6 < y < 12.5e-6, -8.65e-6 < z < -6.15e-6 to be "covered" diff --git a/Examples/Modules/RigidInjection/inputs_2d_BoostedFrame b/Examples/Modules/RigidInjection/inputs_2d_BoostedFrame index 0713f0ef3..d9c0df13f 100644 --- a/Examples/Modules/RigidInjection/inputs_2d_BoostedFrame +++ b/Examples/Modules/RigidInjection/inputs_2d_BoostedFrame @@ -9,11 +9,14 @@ amr.max_grid_size = 512 amr.blocking_factor = 16 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 0 # Is periodic? geometry.prob_lo = -50.e-6 -10.e-6 geometry.prob_hi = 50.e-6 0.e-6 + +# Boundary condition +boundary.field_lo = periodic pml +boundary.field_hi = periodic pml + warpx.cfl = .999 -warpx.do_pml = 1 warpx.do_moving_window = 1 warpx.moving_window_dir = z warpx.moving_window_v = 1.0 # in units of the speed of light diff --git a/Examples/Modules/RigidInjection/inputs_2d_LabFrame b/Examples/Modules/RigidInjection/inputs_2d_LabFrame index a444b9954..65abdb27d 100644 --- a/Examples/Modules/RigidInjection/inputs_2d_LabFrame +++ b/Examples/Modules/RigidInjection/inputs_2d_LabFrame @@ -4,11 +4,14 @@ amr.max_grid_size = 256 amr.blocking_factor = 16 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 0 # Is periodic? geometry.prob_lo = -50.e-6 -10.e-6 geometry.prob_hi = 50.e-6 0.e-6 + +# Boundary condition +boundary.field_lo = periodic pml +boundary.field_hi = periodic pml + warpx.cfl = .999 -warpx.do_pml = 1 warpx.do_moving_window = 1 warpx.moving_window_dir = z warpx.moving_window_v = 1.0 # in units of the speed of light diff --git a/Examples/Modules/boosted_diags/inputs_3d_slice b/Examples/Modules/boosted_diags/inputs_3d_slice index d7c8b457f..680777336 100644 --- a/Examples/Modules/boosted_diags/inputs_3d_slice +++ b/Examples/Modules/boosted_diags/inputs_3d_slice @@ -13,10 +13,12 @@ my_constants.ymax = +128.e-6 my_constants.zmax = 0.96e-6 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 0 # Is periodic? geometry.prob_lo = xmin ymin zmin geometry.prob_hi = xmax ymax zmax +boundary.field_lo = periodic periodic pec +boundary.field_hi = periodic periodic pec + algo.current_deposition = esirkepov algo.charge_deposition = standard algo.field_gathering = energy-conserving @@ -24,7 +26,6 @@ algo.particle_pusher = vay algo.maxwell_solver = ckc warpx.use_filter = 1 warpx.cfl = 1. -warpx.do_pml = 0 # Order of particle shape factors algo.particle_shape = 3 diff --git a/Examples/Modules/dive_cleaning/inputs_3d b/Examples/Modules/dive_cleaning/inputs_3d index 92b34539a..1c8da5464 100644 --- a/Examples/Modules/dive_cleaning/inputs_3d +++ b/Examples/Modules/dive_cleaning/inputs_3d @@ -4,12 +4,13 @@ amr.max_grid_size = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 0 # Is periodic? geometry.prob_lo = -50.e-6 -50.e-6 -50.e-6 geometry.prob_hi = 50.e-6 50.e-6 50.e-6 +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + warpx.do_dive_cleaning = 1 -warpx.do_pml = 1 warpx.use_filter = 0 # Order of particle shape factors diff --git a/Examples/Modules/embedded_boundary_cube/inputs_3d b/Examples/Modules/embedded_boundary_cube/inputs_3d index e1bf83c95..7bdc25749 100644 --- a/Examples/Modules/embedded_boundary_cube/inputs_3d +++ b/Examples/Modules/embedded_boundary_cube/inputs_3d @@ -4,13 +4,14 @@ amr.max_grid_size = 128 amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -0.8 -0.8 -0.8 geometry.prob_hi = 0.8 0.8 0.8 -warpx.do_pml = 0 warpx.const_dt = 1e-6 warpx.cfl = 1 +boundary.field_lo = pec pec pec +boundary.field_hi = pec pec pec + eb2.geom_type = box eb2.box_lo = -0.5 -0.5 -0.5 eb2.box_hi = 0.5 0.5 0.5 diff --git a/Examples/Modules/ionization/inputs_2d_bf_rt b/Examples/Modules/ionization/inputs_2d_bf_rt index f1572da10..db4fe089c 100644 --- a/Examples/Modules/ionization/inputs_2d_bf_rt +++ b/Examples/Modules/ionization/inputs_2d_bf_rt @@ -3,13 +3,14 @@ amr.n_cell = 16 800 amr.max_grid_size = 64 amr.blocking_factor = 16 geometry.coord_sys = 0 -geometry.is_periodic = 1 0 geometry.prob_lo = -5.e-6 -40.e-6 geometry.prob_hi = 5.e-6 0.e-6 amr.max_level = 0 +boundary.field_lo = periodic pml +boundary.field_hi = periodic pml + algo.maxwell_solver = ckc -warpx.do_pml = 1 warpx.cfl = .999 warpx.do_moving_window = 1 warpx.moving_window_dir = z diff --git a/Examples/Modules/ionization/inputs_2d_rt b/Examples/Modules/ionization/inputs_2d_rt index 60402eae9..0549d19be 100644 --- a/Examples/Modules/ionization/inputs_2d_rt +++ b/Examples/Modules/ionization/inputs_2d_rt @@ -3,13 +3,14 @@ amr.n_cell = 16 800 amr.max_grid_size = 64 amr.blocking_factor = 16 geometry.coord_sys = 0 -geometry.is_periodic = 1 0 geometry.prob_lo = -5.e-6 0.e-6 geometry.prob_hi = 5.e-6 20.e-6 amr.max_level = 0 +boundary.field_lo = periodic pml +boundary.field_hi = periodic pml + algo.maxwell_solver = ckc -warpx.do_pml = 1 warpx.cfl = .999 warpx.use_filter = 0 diff --git a/Examples/Modules/laser_injection/inputs_2d_rt b/Examples/Modules/laser_injection/inputs_2d_rt index 09d1209ef..534cd28ad 100644 --- a/Examples/Modules/laser_injection/inputs_2d_rt +++ b/Examples/Modules/laser_injection/inputs_2d_rt @@ -13,10 +13,12 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 1 # Is periodic? geometry.prob_lo = -20.e-6 -15.e-6 # physical domain geometry.prob_hi = 20.e-6 15.e-6 +boundary.field_lo = pec periodic +boundary.field_hi = pec periodic + warpx.serialize_ics = 1 # Verbosity @@ -52,8 +54,6 @@ diagnostics.diags_names = diag1 diag1.intervals = 240 diag1.diag_type = Full -warpx.do_pml = 0 - # Moving window warpx.do_moving_window = 1 warpx.moving_window_dir = x diff --git a/Examples/Modules/laser_injection/inputs_3d_rt b/Examples/Modules/laser_injection/inputs_3d_rt index d2c9ee17a..839e467c8 100644 --- a/Examples/Modules/laser_injection/inputs_3d_rt +++ b/Examples/Modules/laser_injection/inputs_3d_rt @@ -13,17 +13,19 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 0 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 -12.e-6 # physical domain geometry.prob_hi = 20.e-6 20.e-6 12.e-6 +# Boundary condition +boundary.field_lo = periodic periodic pec +boundary.field_hi = periodic periodic pec + warpx.serialize_ics = 1 # Verbosity warpx.verbose = 1 # Algorithms -warpx.do_pml = 0 warpx.use_filter = 0 # CFL diff --git a/Examples/Modules/laser_injection_from_file/inputs.2d_test_txye b/Examples/Modules/laser_injection_from_file/inputs.2d_test_txye index a8f3db773..72fdc2fb0 100644 --- a/Examples/Modules/laser_injection_from_file/inputs.2d_test_txye +++ b/Examples/Modules/laser_injection_from_file/inputs.2d_test_txye @@ -7,13 +7,18 @@ amr.max_grid_size = 512 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -25.e-6 -25.0e-6 # physical domain geometry.prob_hi = 25.e-6 25.e-6 warpx.verbose = 1 warpx.serialize_ics = 1 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.cfl = 0.98 diff --git a/Examples/Modules/nci_corrector/inputs_2d b/Examples/Modules/nci_corrector/inputs_2d index 78970b59e..6430d5d3e 100644 --- a/Examples/Modules/nci_corrector/inputs_2d +++ b/Examples/Modules/nci_corrector/inputs_2d @@ -14,13 +14,15 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 geometry.prob_hi = 20.e-6 20.e-6 +# Boundary condition +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + # Verbosity warpx.use_filter = 1 -warpx.do_pml = 0 # Algorithms algo.current_deposition = esirkepov diff --git a/Examples/Modules/qed/breit_wheeler/inputs_2d b/Examples/Modules/qed/breit_wheeler/inputs_2d index 26426f864..f0a241bf1 100644 --- a/Examples/Modules/qed/breit_wheeler/inputs_2d +++ b/Examples/Modules/qed/breit_wheeler/inputs_2d @@ -6,12 +6,17 @@ amr.n_cell = 32 32 amr.max_grid_size = 16 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 8 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -0.5e-6 -0.5e-6 # physical domain geometry.prob_hi = 0.5e-6 0.5e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.current_deposition = esirkepov @@ -22,7 +27,6 @@ warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 1 # use Perfectly Matched Layer as boundary condition warpx.serialize_ics = 1 # Order of particle shape factors diff --git a/Examples/Modules/qed/breit_wheeler/inputs_3d b/Examples/Modules/qed/breit_wheeler/inputs_3d index e31e2c536..e55989729 100644 --- a/Examples/Modules/qed/breit_wheeler/inputs_3d +++ b/Examples/Modules/qed/breit_wheeler/inputs_3d @@ -6,12 +6,17 @@ amr.n_cell = 16 16 16 amr.max_grid_size = 16 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 8 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -0.5e-6 -0.5e-6 -0.5e-6 # physical domain geometry.prob_hi = 0.5e-6 0.5e-6 0.5e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.current_deposition = esirkepov @@ -22,7 +27,6 @@ warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 1 # use Perfectly Matched Layer as boundary condition warpx.serialize_ics = 1 # Order of particle shape factors diff --git a/Examples/Modules/qed/quantum_synchrotron/inputs_2d b/Examples/Modules/qed/quantum_synchrotron/inputs_2d index c735bafd7..56cbf4c4b 100644 --- a/Examples/Modules/qed/quantum_synchrotron/inputs_2d +++ b/Examples/Modules/qed/quantum_synchrotron/inputs_2d @@ -6,12 +6,17 @@ amr.n_cell = 32 32 amr.max_grid_size = 16 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 8 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -0.25e-6 -0.25e-6 # physical domain geometry.prob_hi = 0.25e-6 0.25e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.current_deposition = esirkepov @@ -22,7 +27,6 @@ warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 1 # use Perfectly Matched Layer as boundary condition warpx.serialize_ics = 1 # Order of particle shape factors diff --git a/Examples/Modules/qed/quantum_synchrotron/inputs_3d b/Examples/Modules/qed/quantum_synchrotron/inputs_3d index e7a3c7175..e9ff2a8db 100644 --- a/Examples/Modules/qed/quantum_synchrotron/inputs_3d +++ b/Examples/Modules/qed/quantum_synchrotron/inputs_3d @@ -6,12 +6,17 @@ amr.n_cell = 16 16 16 amr.max_grid_size = 16 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 8 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -0.25e-6 -0.25e-6 -0.25e-6 # physical domain geometry.prob_hi = 0.25e-6 0.25e-6 0.25e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.current_deposition = esirkepov @@ -22,7 +27,6 @@ warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 1 # use Perfectly Matched Layer as boundary condition warpx.serialize_ics = 1 # Order of particle shape factors diff --git a/Examples/Modules/qed/schwinger/inputs_3d_schwinger b/Examples/Modules/qed/schwinger/inputs_3d_schwinger index fb1b98286..1f532eceb 100644 --- a/Examples/Modules/qed/schwinger/inputs_3d_schwinger +++ b/Examples/Modules/qed/schwinger/inputs_3d_schwinger @@ -6,12 +6,17 @@ amr.n_cell = 8 8 32 amr.max_grid_size = 16 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 8 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -5.e-7 -5.e-7 -5.e-7 # physical domain geometry.prob_hi = 5.e-7 5.e-7 5.e-7 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.current_deposition = esirkepov @@ -20,7 +25,6 @@ algo.field_gathering = momentum-conserving algo.particle_pusher = boris warpx.verbose = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 0 # use Perfectly Matched Layer as boundary condition warpx.serialize_ics = 1 warpx.use_filter = 0 diff --git a/Examples/Modules/resampling/inputs_leveling_thinning b/Examples/Modules/resampling/inputs_leveling_thinning index e5de6b7f1..9990fd563 100644 --- a/Examples/Modules/resampling/inputs_leveling_thinning +++ b/Examples/Modules/resampling/inputs_leveling_thinning @@ -2,12 +2,13 @@ max_step = 8 amr.n_cell = 16 16 amr.blocking_factor = 8 amr.max_grid_size = 8 -geometry.is_periodic = 1 1 geometry.prob_lo = 0. 0. geometry.prob_hi = 16. 16. amr.max_level = 0 -warpx.do_pml = 0 +# Boundary condition +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic # Order of particle shape factors algo.particle_shape = 1 diff --git a/Examples/Physics_applications/laser_acceleration/inputs_2d b/Examples/Physics_applications/laser_acceleration/inputs_2d index afd6ea585..8917f5f05 100644 --- a/Examples/Physics_applications/laser_acceleration/inputs_2d +++ b/Examples/Physics_applications/laser_acceleration/inputs_2d @@ -6,7 +6,6 @@ amr.n_cell = 64 512 amr.max_grid_size = 64 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 32 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -30.e-6 -56.e-6 # physical domain geometry.prob_hi = 30.e-6 12.e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) @@ -14,13 +13,18 @@ amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not s # warpx.fine_tag_hi = 5.e-6 -25.e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = pml pml +boundary.field_hi = pml pml + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 1 # use Perfectly Matched Layer as boundary condition warpx.do_moving_window = 1 warpx.moving_window_dir = z # Only z is supported for the moment warpx.moving_window_v = 1.0 # units of speed of light diff --git a/Examples/Physics_applications/laser_acceleration/inputs_2d_boost b/Examples/Physics_applications/laser_acceleration/inputs_2d_boost index 240c602bf..fa733880e 100644 --- a/Examples/Physics_applications/laser_acceleration/inputs_2d_boost +++ b/Examples/Physics_applications/laser_acceleration/inputs_2d_boost @@ -8,12 +8,17 @@ amr.max_grid_size = 64 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 0 # Is periodic? # physical domain geometry.prob_lo = -128.e-6 -40.e-6 geometry.prob_hi = 128.e-6 0.96e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic pec +boundary.field_hi = periodic pec + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 @@ -25,7 +30,6 @@ algo.particle_pusher = vay algo.maxwell_solver = ckc warpx.use_filter = 1 warpx.cfl = 1. -warpx.do_pml = 0 # Moving window warpx.do_moving_window = 1 warpx.moving_window_dir = z diff --git a/Examples/Physics_applications/laser_acceleration/inputs_2d_rz b/Examples/Physics_applications/laser_acceleration/inputs_2d_rz index 9b79634f8..718a96ee7 100644 --- a/Examples/Physics_applications/laser_acceleration/inputs_2d_rz +++ b/Examples/Physics_applications/laser_acceleration/inputs_2d_rz @@ -6,13 +6,15 @@ amr.n_cell = 64 512 amr.max_grid_size = 64 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 32 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 1 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = 0. -56.e-6 # physical domain geometry.prob_hi = 30.e-6 12.e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) warpx.n_rz_azimuthal_modes = 2 +boundary.field_lo = none pec +boundary.field_hi = pec pec + ################################# ############ NUMERICS ########### ################################# @@ -20,7 +22,6 @@ warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 0 # use Perfectly Matched Layer as boundary condition warpx.do_moving_window = 1 warpx.moving_window_dir = z # Only z is supported for the moment warpx.moving_window_v = 1.0 # units of speed of light diff --git a/Examples/Physics_applications/laser_acceleration/inputs_3d b/Examples/Physics_applications/laser_acceleration/inputs_3d index 1dd0b5253..249a54669 100644 --- a/Examples/Physics_applications/laser_acceleration/inputs_3d +++ b/Examples/Physics_applications/laser_acceleration/inputs_3d @@ -6,7 +6,6 @@ amr.n_cell = 64 64 512 amr.max_grid_size = 64 # maximum size of each AMReX box, used to decompose the domain amr.blocking_factor = 32 # minimum size of each AMReX box, used to decompose the domain geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 0 # Is periodic? geometry.prob_lo = -30.e-6 -30.e-6 -56.e-6 # physical domain geometry.prob_hi = 30.e-6 30.e-6 12.e-6 amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not supported) @@ -14,13 +13,18 @@ amr.max_level = 0 # Maximum level in hierarchy (1 might be unstable, >1 is not s # warpx.fine_tag_hi = 5.e-6 5.e-6 -30.e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic pec +boundary.field_hi = periodic periodic pec + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 warpx.cfl = 1. # if 1., the time step is set to its CFL limit -warpx.do_pml = 0 # use Perfectly Matched Layer as boundary condition warpx.do_moving_window = 1 warpx.moving_window_dir = z # Only z is supported for the moment warpx.moving_window_v = 1.0 # units of speed of light diff --git a/Examples/Physics_applications/laser_ion/inputs b/Examples/Physics_applications/laser_ion/inputs index d69f55f87..8a8b18f66 100644 --- a/Examples/Physics_applications/laser_ion/inputs +++ b/Examples/Physics_applications/laser_ion/inputs @@ -25,7 +25,10 @@ amr.n_cell = 2688 3712 amr.max_level = 0 geometry.prob_lo = -7.5e-6 -5.e-6 geometry.prob_hi = 7.5e-6 25.e-6 -geometry.is_periodic = 0 0 # non-periodic (default) + +# Boundary condition +boundary.field_lo = pml pml +boundary.field_hi = pml pml # Order of particle shape factors algo.particle_shape = 3 diff --git a/Examples/Physics_applications/plasma_acceleration/inputs_2d b/Examples/Physics_applications/plasma_acceleration/inputs_2d index 9aceea519..f25f3d7ff 100644 --- a/Examples/Physics_applications/plasma_acceleration/inputs_2d +++ b/Examples/Physics_applications/plasma_acceleration/inputs_2d @@ -7,19 +7,24 @@ amr.max_grid_size = 128 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -125.e-6 -149.e-6 geometry.prob_hi = 125.e-6 1.e-6 warpx.fine_tag_lo = -12.e-6 -110.e-6 warpx.fine_tag_hi = 12.e-6 -100.e-6 ################################# +######## Boundary condition ##### +################################# +boundary.field_lo = pml pml +boundary.field_hi = pml pml +# PML +warpx.pml_ncell = 10 + +################################# ############ NUMERICS ########### ################################# algo.maxwell_solver = ckc warpx.use_filter = 1 -warpx.do_pml = 1 -warpx.pml_ncell = 10 warpx.cfl = .99 warpx.do_moving_window = 1 warpx.moving_window_dir = z diff --git a/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost b/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost index 0277067fb..304da69c8 100644 --- a/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost +++ b/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost @@ -7,17 +7,21 @@ amr.max_grid_size = 128 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -125.e-6 -149.e-6 geometry.prob_hi = 125.e-6 1.e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = pml pml +boundary.field_hi = pml pml + +################################# ############ NUMERICS ########### ################################# algo.maxwell_solver = ckc warpx.verbose = 1 warpx.use_filter = 1 -warpx.do_pml = 1 warpx.pml_ncell = 10 warpx.cfl = .99 warpx.do_moving_window = 1 diff --git a/Examples/Physics_applications/plasma_acceleration/inputs_3d_boost b/Examples/Physics_applications/plasma_acceleration/inputs_3d_boost index 8ad4e3056..55f74cfcb 100644 --- a/Examples/Physics_applications/plasma_acceleration/inputs_3d_boost +++ b/Examples/Physics_applications/plasma_acceleration/inputs_3d_boost @@ -7,18 +7,22 @@ amr.max_grid_size = 64 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 0 # Is periodic? geometry.prob_lo = -0.00015 -0.00015 -0.00012 geometry.prob_hi = 0.00015 0.00015 1.e-06 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic pml +boundary.field_hi = periodic periodic pml + +################################# ############ NUMERICS ########### ################################# algo.maxwell_solver = ckc warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 -warpx.do_pml = 1 warpx.cfl = .99 warpx.do_moving_window = 1 warpx.moving_window_dir = z diff --git a/Examples/Physics_applications/plasma_mirror/inputs_2d b/Examples/Physics_applications/plasma_mirror/inputs_2d index 1cc422c89..14eec0537 100644 --- a/Examples/Physics_applications/plasma_mirror/inputs_2d +++ b/Examples/Physics_applications/plasma_mirror/inputs_2d @@ -7,13 +7,18 @@ amr.max_grid_size = 128 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -100.e-6 0. # physical domain geometry.prob_hi = 100.e-6 100.e-6 warpx.verbose = 1 warpx.serialize_ics = 1 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = pml pml +boundary.field_hi = pml pml + +################################# ############ NUMERICS ########### ################################# my_constants.zc = 20.e-6 diff --git a/Examples/Physics_applications/uniform_plasma/inputs_2d b/Examples/Physics_applications/uniform_plasma/inputs_2d index a3bd0d3a8..05db6a840 100644 --- a/Examples/Physics_applications/uniform_plasma/inputs_2d +++ b/Examples/Physics_applications/uniform_plasma/inputs_2d @@ -7,11 +7,16 @@ amr.max_grid_size = 64 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 # physical domain geometry.prob_hi = 20.e-6 20.e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.serialize_ics = 1 diff --git a/Examples/Physics_applications/uniform_plasma/inputs_3d b/Examples/Physics_applications/uniform_plasma/inputs_3d index 3dd47c255..f342ceb28 100644 --- a/Examples/Physics_applications/uniform_plasma/inputs_3d +++ b/Examples/Physics_applications/uniform_plasma/inputs_3d @@ -7,11 +7,16 @@ amr.max_grid_size = 32 amr.blocking_factor = 16 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 -20.e-6 # physical domain geometry.prob_hi = 20.e-6 20.e-6 20.e-6 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.serialize_ics = 1 diff --git a/Examples/Tests/ElectrostaticSphere/inputs_3d b/Examples/Tests/ElectrostaticSphere/inputs_3d index 89903ab37..a0035ee3a 100644 --- a/Examples/Tests/ElectrostaticSphere/inputs_3d +++ b/Examples/Tests/ElectrostaticSphere/inputs_3d @@ -4,10 +4,10 @@ amr.max_level = 0 amr.blocking_factor = 8 amr.max_grid_size = 128 geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -0.5 -0.5 -0.5 geometry.prob_hi = 0.5 0.5 0.5 -warpx.do_pml = 0 +boundary.field_lo = pec pec pec +boundary.field_hi = pec pec pec warpx.const_dt = 1e-6 warpx.do_electrostatic = relativistic diff --git a/Examples/Tests/ElectrostaticSphere/inputs_rz b/Examples/Tests/ElectrostaticSphere/inputs_rz index 6634fa3f5..23f64cd7f 100644 --- a/Examples/Tests/ElectrostaticSphere/inputs_rz +++ b/Examples/Tests/ElectrostaticSphere/inputs_rz @@ -4,10 +4,10 @@ amr.max_level = 0 amr.blocking_factor = 8 amr.max_grid_size = 128 geometry.coord_sys = 1 -geometry.is_periodic = 0 0 0 geometry.prob_lo = 0. -0.5 geometry.prob_hi = 0.5 0.5 -warpx.do_pml = 0 +boundary.field_lo = none pec +boundary.field_hi = pec pec warpx.const_dt = 1e-6 warpx.do_electrostatic = labframe warpx.use_filter = 0 diff --git a/Examples/Tests/ElectrostaticSphereEB/inputs_3d b/Examples/Tests/ElectrostaticSphereEB/inputs_3d index fa1c558a2..aa30f1ccd 100644 --- a/Examples/Tests/ElectrostaticSphereEB/inputs_3d +++ b/Examples/Tests/ElectrostaticSphereEB/inputs_3d @@ -14,7 +14,6 @@ boundary.potential_lo_z = 0 boundary.potential_hi_z = 0 geometry.prob_lo = -0.5 -0.5 -0.5 geometry.prob_hi = 0.5 0.5 0.5 -warpx.do_pml = 0 warpx.const_dt = 1e-6 warpx.do_electrostatic = labframe diff --git a/Examples/Tests/Langmuir/inputs_2d_multi_rt b/Examples/Tests/Langmuir/inputs_2d_multi_rt index 35b8c9fac..7831bbb49 100644 --- a/Examples/Tests/Langmuir/inputs_2d_multi_rt +++ b/Examples/Tests/Langmuir/inputs_2d_multi_rt @@ -13,10 +13,13 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 # physical domain geometry.prob_hi = 20.e-6 20.e-6 +# Boundary condition +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + warpx.serialize_ics = 1 # Verbosity @@ -24,7 +27,6 @@ warpx.verbose = 1 # Algorithms algo.field_gathering = energy-conserving -warpx.do_pml = 0 warpx.use_filter = 0 # Order of particle shape factors diff --git a/Examples/Tests/Langmuir/inputs_2d_multi_rz_rt b/Examples/Tests/Langmuir/inputs_2d_multi_rz_rt index f133cdcb7..06ed884dc 100644 --- a/Examples/Tests/Langmuir/inputs_2d_multi_rz_rt +++ b/Examples/Tests/Langmuir/inputs_2d_multi_rz_rt @@ -24,7 +24,6 @@ warpx.serialize_ics = 1 warpx.verbose = 1 # Algorithms -warpx.do_pml = 0 algo.field_gathering = energy-conserving algo.current_deposition = esirkepov warpx.use_filter = 0 diff --git a/Examples/Tests/Langmuir/inputs_3d_multi_rt b/Examples/Tests/Langmuir/inputs_3d_multi_rt index 4d08a2a43..232bf3d29 100644 --- a/Examples/Tests/Langmuir/inputs_3d_multi_rt +++ b/Examples/Tests/Langmuir/inputs_3d_multi_rt @@ -13,10 +13,13 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -20.e-6 -20.e-6 -20.e-6 # physical domain geometry.prob_hi = 20.e-6 20.e-6 20.e-6 +# Boundary condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + warpx.serialize_ics = 1 # Verbosity @@ -25,7 +28,6 @@ warpx.verbose = 1 # Algorithms algo.current_deposition = esirkepov algo.field_gathering = energy-conserving -warpx.do_pml = 0 warpx.use_filter = 0 # Order of particle shape factors diff --git a/Examples/Tests/Larmor/inputs_2d_mr b/Examples/Tests/Larmor/inputs_2d_mr index 7431180d6..ff2598f01 100644 --- a/Examples/Tests/Larmor/inputs_2d_mr +++ b/Examples/Tests/Larmor/inputs_2d_mr @@ -19,12 +19,14 @@ warpx.fine_tag_hi = 0.8 0.8 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 0 # Is periodic? geometry.prob_lo = -2.0 -2.0 # physical domain geometry.prob_hi = 2.0 2.0 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 10 particles.B_ext_particle_init_style = "constant" diff --git a/Examples/Tests/Maxwell_Hybrid_QED/inputs_2d b/Examples/Tests/Maxwell_Hybrid_QED/inputs_2d index 693c391f8..390ec0f41 100644 --- a/Examples/Tests/Maxwell_Hybrid_QED/inputs_2d +++ b/Examples/Tests/Maxwell_Hybrid_QED/inputs_2d @@ -6,7 +6,6 @@ amr.n_cell = 64 1024 amr.max_grid_size = 4096 amr.blocking_factor = 8 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -32.e-6 -512.e-6 geometry.prob_hi = 32.e-6 512.e-6 amr.max_level = 0 @@ -14,13 +13,18 @@ warpx.do_nodal = 1 warpx.quantum_xi = 1.e-23 ################################# +####### Boundary Condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# algo.maxwell_solver = psatd warpx.verbose = 0 warpx.use_filter = 1 warpx.cfl = 1. -warpx.do_pml = 0 warpx.use_hybrid_QED = 1 ################################# diff --git a/Examples/Tests/PML/inputs_2d b/Examples/Tests/PML/inputs_2d index 3284e98fd..f7a71bc59 100644 --- a/Examples/Tests/PML/inputs_2d +++ b/Examples/Tests/PML/inputs_2d @@ -13,16 +13,18 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -30.e-6 -120.e-6 geometry.prob_hi = 30.e-6 120.e-6 +# Boundary condition +boundary.field_lo = pml pml +boundary.field_hi = pml pml + # Verbosity warpx.verbose = 1 # Algorithms warpx.cfl = 1.0 -warpx.do_pml = 1 warpx.use_filter = 0 warpx.do_moving_window = 0 diff --git a/Examples/Tests/PML/inputs_3d b/Examples/Tests/PML/inputs_3d index c3e33977c..be66df340 100644 --- a/Examples/Tests/PML/inputs_3d +++ b/Examples/Tests/PML/inputs_3d @@ -6,13 +6,15 @@ amr.max_level = 0 # Domain and boundary conditions geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -1.5e-05 -1.5e-05 -1.5e-05 geometry.prob_hi = 1.5e-05 1.5e-05 1.5e-05 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # Numerical parameters warpx.cfl = 1.0 -warpx.do_pml = 1 warpx.do_nodal = 0 warpx.do_dive_cleaning = 0 warpx.do_pml_dive_cleaning = 1 diff --git a/Examples/Tests/SingleParticle/inputs_2d b/Examples/Tests/SingleParticle/inputs_2d index 152cac0a2..fef6e896d 100644 --- a/Examples/Tests/SingleParticle/inputs_2d +++ b/Examples/Tests/SingleParticle/inputs_2d @@ -4,10 +4,13 @@ amr.max_level = 0 amr.blocking_factor = 8 amr.max_grid_size = 8 geometry.coord_sys = 0 -geometry.is_periodic = 0 0 geometry.prob_lo = -8 -12 geometry.prob_hi = 8 12 -warpx.do_pml = 0 + +# Boundary condition +boundary.field_lo = pec pec +boundary.field_hi = pec pec + algo.charge_deposition = standard algo.field_gathering = energy-conserving warpx.cfl = 1.0 diff --git a/Examples/Tests/averaged_galilean/inputs_avg_2d b/Examples/Tests/averaged_galilean/inputs_avg_2d index bfb0e3452..441266946 100644 --- a/Examples/Tests/averaged_galilean/inputs_avg_2d +++ b/Examples/Tests/averaged_galilean/inputs_avg_2d @@ -12,12 +12,16 @@ psatd.v_galilean = 0 0 -0.99498743710662 psatd.do_time_averaging = 1 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 - geometry.prob_lo = -12.3776 -49.5104 geometry.prob_hi = 12.3776 49.5104 ################################# +###### Boundary Condition ####### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 diff --git a/Examples/Tests/averaged_galilean/inputs_avg_3d b/Examples/Tests/averaged_galilean/inputs_avg_3d index 59e28b8de..1fef0ea0a 100644 --- a/Examples/Tests/averaged_galilean/inputs_avg_3d +++ b/Examples/Tests/averaged_galilean/inputs_avg_3d @@ -11,11 +11,16 @@ psatd.v_galilean = 0. 0. 0.99498743710662 psatd.do_time_averaging = 1 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -9.67 -9.67 -19.34 geometry.prob_hi = 9.67 9.67 19.34 ################################# +###### Boundary Condition ####### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 diff --git a/Examples/Tests/collision/inputs_2d b/Examples/Tests/collision/inputs_2d index 2e720ba7e..70720c5d0 100644 --- a/Examples/Tests/collision/inputs_2d +++ b/Examples/Tests/collision/inputs_2d @@ -7,10 +7,14 @@ amr.max_grid_size = 8 amr.blocking_factor = 8 amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 geometry.prob_lo = 0. 0. geometry.prob_hi = 4.154046151855669e2 4.154046151855669e2 -warpx.do_pml = 0 + +################################# +###### Boundary Condition ####### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic ################################# ############ NUMERICS ########### diff --git a/Examples/Tests/collision/inputs_3d b/Examples/Tests/collision/inputs_3d index 009a495c8..955e8ceed 100644 --- a/Examples/Tests/collision/inputs_3d +++ b/Examples/Tests/collision/inputs_3d @@ -7,10 +7,14 @@ amr.max_grid_size = 8 amr.blocking_factor = 8 amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = 0. 0. 0. geometry.prob_hi = 4.154046151855669e2 4.154046151855669e2 4.154046151855669e2 -warpx.do_pml = 0 + +################################# +###### Boundary Condition ####### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic ################################# ############ NUMERICS ########### diff --git a/Examples/Tests/comoving/inputs_2d_hybrid b/Examples/Tests/comoving/inputs_2d_hybrid index 055224892..2c21788f8 100644 --- a/Examples/Tests/comoving/inputs_2d_hybrid +++ b/Examples/Tests/comoving/inputs_2d_hybrid @@ -5,10 +5,15 @@ amr.n_cell = 96 704 warpx.numprocs = 1 2 geometry.coord_sys = 0 -geometry.is_periodic = 1 0 geometry.prob_lo = -90.e-6 -70.e-6 geometry.prob_hi = 90.e-6 0.e-6 +################################# +###### Boundary Condition ####### +################################# +boundary.field_lo = periodic damped +boundary.field_hi = periodic damped + algo.maxwell_solver = psatd algo.current_deposition = direct algo.charge_deposition = standard @@ -23,7 +28,6 @@ psatd.v_comoving = 0. 0. -0.9970370305242862 warpx.cfl = 1. warpx.do_nodal = 0 -warpx.do_pml = 0 warpx.gamma_boost = 13. warpx.boost_direction = z diff --git a/Examples/Tests/divb_cleaning/inputs_3d b/Examples/Tests/divb_cleaning/inputs_3d index 8e5a17e4a..79fec53e7 100644 --- a/Examples/Tests/divb_cleaning/inputs_3d +++ b/Examples/Tests/divb_cleaning/inputs_3d @@ -8,10 +8,13 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 -geometry.is_periodic = 0 0 0 geometry.prob_lo = -50.e-6 -50.e-6 -50.e-6 geometry.prob_hi = 50.e-6 50.e-6 50.e-6 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # Order of particle shape factors algo.particle_shape = 3 diff --git a/Examples/Tests/galilean/inputs_2d b/Examples/Tests/galilean/inputs_2d index 3d67f201b..c392db77d 100644 --- a/Examples/Tests/galilean/inputs_2d +++ b/Examples/Tests/galilean/inputs_2d @@ -10,11 +10,16 @@ amr.max_level = 0 psatd.v_galilean = 0. 0. -0.99498743710662 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 geometry.prob_lo = -38.68 -38.68 geometry.prob_hi = 38.68 38.68 ################################# +####### Boundary Condition ###### +################################# +boundary.field_lo = periodic periodic +boundary.field_hi = periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 diff --git a/Examples/Tests/galilean/inputs_2d_hybrid b/Examples/Tests/galilean/inputs_2d_hybrid index 892dfe530..0cab68eab 100644 --- a/Examples/Tests/galilean/inputs_2d_hybrid +++ b/Examples/Tests/galilean/inputs_2d_hybrid @@ -5,10 +5,13 @@ amr.n_cell = 96 704 warpx.numprocs = 1 2 geometry.coord_sys = 0 -geometry.is_periodic = 1 0 geometry.prob_lo = -90.e-6 -70.e-6 geometry.prob_hi = 90.e-6 0.e-6 +# Boundary condition +boundary.field_lo = periodic damped +boundary.field_hi = periodic damped + algo.maxwell_solver = psatd algo.current_deposition = direct algo.charge_deposition = standard @@ -23,7 +26,6 @@ psatd.use_default_v_galilean = 1 warpx.cfl = 1. warpx.do_nodal = 0 -warpx.do_pml = 0 warpx.gamma_boost = 13. warpx.boost_direction = z diff --git a/Examples/Tests/galilean/inputs_3d b/Examples/Tests/galilean/inputs_3d index 671146762..f8042a918 100644 --- a/Examples/Tests/galilean/inputs_3d +++ b/Examples/Tests/galilean/inputs_3d @@ -10,11 +10,16 @@ amr.max_level = 0 psatd.v_galilean = 0. 0. 0.99498743710662 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -9.67 -9.67 -9.67 geometry.prob_hi = 9.67 9.67 9.67 ################################# +###### Boundary condition ####### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + +################################# ############ NUMERICS ########### ################################# warpx.verbose = 1 diff --git a/Examples/Tests/initial_distribution/inputs b/Examples/Tests/initial_distribution/inputs index cb12f251f..b307db142 100644 --- a/Examples/Tests/initial_distribution/inputs +++ b/Examples/Tests/initial_distribution/inputs @@ -7,10 +7,14 @@ amr.max_grid_size = 8 amr.blocking_factor = 8 amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -1.0 -1.0 -1.0 geometry.prob_hi = 1.0 1.0 1.0 -warpx.do_pml = 0 + +################################# +####### Boundary Condition ###### +################################# +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic ################################# ############ NUMERICS ########### diff --git a/Examples/Tests/initial_plasma_profile/inputs b/Examples/Tests/initial_plasma_profile/inputs index 28de9e67f..e62d47aaa 100644 --- a/Examples/Tests/initial_plasma_profile/inputs +++ b/Examples/Tests/initial_plasma_profile/inputs @@ -7,10 +7,14 @@ amr.max_grid_size = 64 amr.blocking_factor = 64 amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 0 0 geometry.prob_lo = -0.00024190484157981564 -0.00016126989438654374 geometry.prob_hi = 0.00024190484157981564 1.e-6 -warpx.do_pml = 0 + +################################# +###### Boundary condition ####### +################################# +boundary.field_lo = pec pec +boundary.field_hi = pec pec ################################# ############ NUMERICS ########### diff --git a/Examples/Tests/laser_on_fine/inputs_2d b/Examples/Tests/laser_on_fine/inputs_2d index e973c126e..b256aa6a3 100644 --- a/Examples/Tests/laser_on_fine/inputs_2d +++ b/Examples/Tests/laser_on_fine/inputs_2d @@ -19,12 +19,14 @@ warpx.fine_tag_hi = 10.e-6 0.4e-6 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 0 # Is periodic? geometry.prob_lo = -30.e-6 -1.25e-6 # physical domain geometry.prob_hi = 30.e-6 1.25e-6 +# Boundary condition +boundary.field_lo = periodic pml +boundary.field_hi = periodic pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 10 # Verbosity diff --git a/Examples/Tests/multi_J/inputs_2d b/Examples/Tests/multi_J/inputs_2d index 2bf505f97..a0b46ada1 100644 --- a/Examples/Tests/multi_J/inputs_2d +++ b/Examples/Tests/multi_J/inputs_2d @@ -8,10 +8,13 @@ warpx.numprocs = 1 2 # Mesh refinement and geometry amr.max_level = 0 geometry.coord_sys = 0 -geometry.is_periodic = 1 0 geometry.prob_lo = -200e-6 -220e-6 geometry.prob_hi = 200e-6 10e-6 +# Boundary condition +boundary.field_lo = periodic damped +boundary.field_hi = periodic damped + # Algorithms algo.current_deposition = direct algo.field_gathering = energy-conserving @@ -22,7 +25,6 @@ algo.particle_shape = 3 # Numerics warpx.cfl = 3.19 warpx.do_nodal = 1 -warpx.do_pml = 0 warpx.use_filter = 1 warpx.verbose = 1 diff --git a/Examples/Tests/particle_pusher/inputs_3d b/Examples/Tests/particle_pusher/inputs_3d index 8862906f5..f4382a246 100644 --- a/Examples/Tests/particle_pusher/inputs_3d +++ b/Examples/Tests/particle_pusher/inputs_3d @@ -9,12 +9,12 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # Cartesian -geometry.is_periodic = 1 1 1 # yes geometry.prob_lo = -2.077023075927835e+07 -2.077023075927835e+07 -2.077023075927835e+07 geometry.prob_hi = 2.077023075927835e+07 2.077023075927835e+07 2.077023075927835e+07 -# PML -warpx.do_pml = 0 +# Boundary Condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic # Algorithms algo.charge_deposition = standard diff --git a/Examples/Tests/particles_in_PML/inputs_2d b/Examples/Tests/particles_in_PML/inputs_2d index ece10f2d7..7d876947f 100644 --- a/Examples/Tests/particles_in_PML/inputs_2d +++ b/Examples/Tests/particles_in_PML/inputs_2d @@ -7,12 +7,14 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -32.e-6 -32.e-6 # physical domain geometry.prob_hi = 32.e-6 32.e-6 +# Boundary condition +boundary.field_lo = pml pml +boundary.field_hi = pml pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 12 warpx.pml_delta = 6 warpx.pml_has_particles = 1 diff --git a/Examples/Tests/particles_in_PML/inputs_3d b/Examples/Tests/particles_in_PML/inputs_3d index dfe7b673b..8f7288259 100644 --- a/Examples/Tests/particles_in_PML/inputs_3d +++ b/Examples/Tests/particles_in_PML/inputs_3d @@ -7,12 +7,14 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 0 # Is periodic? geometry.prob_lo = -32.e-6 -32.e-6 -32.e-6 # physical domain geometry.prob_hi = 32.e-6 32.e-6 32.e-6 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 12 warpx.pml_delta = 6 warpx.pml_has_particles = 1 diff --git a/Examples/Tests/particles_in_PML/inputs_mr_2d b/Examples/Tests/particles_in_PML/inputs_mr_2d index f01206343..098e60b85 100644 --- a/Examples/Tests/particles_in_PML/inputs_mr_2d +++ b/Examples/Tests/particles_in_PML/inputs_mr_2d @@ -7,14 +7,16 @@ amr.max_level = 1 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 0 # Is periodic? geometry.prob_lo = -32.e-6 -32.e-6 # physical domain geometry.prob_hi = 32.e-6 32.e-6 warpx.fine_tag_lo = -8.e-6 -8.e-6 # physical domain warpx.fine_tag_hi = 8.e-6 8.e-6 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 12 warpx.pml_delta = 6 warpx.pml_has_particles = 1 diff --git a/Examples/Tests/particles_in_PML/inputs_mr_3d b/Examples/Tests/particles_in_PML/inputs_mr_3d index 194e29f7c..faf9085c6 100644 --- a/Examples/Tests/particles_in_PML/inputs_mr_3d +++ b/Examples/Tests/particles_in_PML/inputs_mr_3d @@ -7,14 +7,16 @@ amr.max_level = 1 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 0 # Is periodic? geometry.prob_lo = -32.e-6 -32.e-6 -32.e-6 # physical domain geometry.prob_hi = 32.e-6 32.e-6 32.e-6 warpx.fine_tag_lo = -8.e-6 -8.e-6 -8.e-6 # physical domain warpx.fine_tag_hi = 8.e-6 8.e-6 8.e-6 +# Boundary condition +boundary.field_lo = pml pml pml +boundary.field_hi = pml pml pml + # PML -warpx.do_pml = 1 warpx.pml_ncell = 12 warpx.pml_delta = 6 warpx.pml_has_particles = 1 diff --git a/Examples/Tests/photon_pusher/inputs_3d b/Examples/Tests/photon_pusher/inputs_3d index faf74abf5..3d4386c0e 100644 --- a/Examples/Tests/photon_pusher/inputs_3d +++ b/Examples/Tests/photon_pusher/inputs_3d @@ -8,14 +8,16 @@ amr.max_level = 0 amr.blocking_factor = 8 amr.max_grid_size = 8 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -0.5e-6 -0.5e-6 -0.5e-6 geometry.prob_hi = 0.5e-6 0.5e-6 0.5e-6 -warpx.do_pml = 0 algo.charge_deposition = standard algo.field_gathering = energy-conserving warpx.cfl = 1.0 +# Boundary condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + # Order of particle shape factors algo.particle_shape = 1 diff --git a/Examples/Tests/radiation_reaction/test_const_B_analytical/inputs_3d b/Examples/Tests/radiation_reaction/test_const_B_analytical/inputs_3d index 40c0bd370..65a2eb4b8 100644 --- a/Examples/Tests/radiation_reaction/test_const_B_analytical/inputs_3d +++ b/Examples/Tests/radiation_reaction/test_const_B_analytical/inputs_3d @@ -8,7 +8,6 @@ amr.max_level = 0 amr.blocking_factor = 32 amr.max_grid_size = 64 geometry.coord_sys = 0 -geometry.is_periodic = 1 1 1 geometry.prob_lo = -8e-07 -8e-07 -8e-07 geometry.prob_hi = 8e-07 8e-07 8e-07 warpx.do_pml = 0 @@ -17,6 +16,10 @@ algo.field_gathering = energy-conserving warpx.cfl = 1.0 warpx.serialize_ics = 1 +# Boundary condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + # Order of particle shape factors algo.particle_shape = 1 diff --git a/Examples/Tests/reduced_diags/inputs b/Examples/Tests/reduced_diags/inputs index e8941940f..3420869ed 100644 --- a/Examples/Tests/reduced_diags/inputs +++ b/Examples/Tests/reduced_diags/inputs @@ -13,10 +13,13 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = -1. -1. -1. # physical domain geometry.prob_hi = 1. 1. 1. +# Boundary condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + # Algorithms algo.current_deposition = esirkepov algo.field_gathering = energy-conserving # or momentum-conserving diff --git a/Examples/Tests/reduced_diags/inputs_loadbalancecosts b/Examples/Tests/reduced_diags/inputs_loadbalancecosts index c0d40a582..3d1be1764 100644 --- a/Examples/Tests/reduced_diags/inputs_loadbalancecosts +++ b/Examples/Tests/reduced_diags/inputs_loadbalancecosts @@ -13,10 +13,13 @@ amr.max_level = 0 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 1 # Is periodic? geometry.prob_lo = 0. 0. 0. # physical domain geometry.prob_hi = 4. 4. 4. +# Boundary condition +boundary.field_lo = periodic periodic periodic +boundary.field_hi = periodic periodic periodic + # Algorithms algo.current_deposition = esirkepov algo.field_gathering = energy-conserving # or momentum-conserving diff --git a/Examples/Tests/restart/inputs b/Examples/Tests/restart/inputs index 3f9e2692e..50b5cdfa9 100644 --- a/Examples/Tests/restart/inputs +++ b/Examples/Tests/restart/inputs @@ -8,18 +8,22 @@ amr.max_grid_size = 64 amr.blocking_factor = 32 amr.max_level = 0 geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 1 1 0 # Is periodic? geometry.prob_lo = -0.00015 -0.00015 -0.00012 geometry.prob_hi = 0.00015 0.00015 1.e-06 ################################# +####### Boundary condition ###### +################################# +boundary.field_lo = periodic periodic pml +boundary.field_hi = periodic periodic pml + +################################# ############ NUMERICS ########### ################################# algo.maxwell_solver = ckc warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 -warpx.do_pml = 1 warpx.cfl = .99 warpx.do_moving_window = 1 warpx.moving_window_dir = z diff --git a/Examples/Tests/subcycling/inputs_2d b/Examples/Tests/subcycling/inputs_2d index 4a43bf5d1..9d01163bb 100644 --- a/Examples/Tests/subcycling/inputs_2d +++ b/Examples/Tests/subcycling/inputs_2d @@ -14,15 +14,17 @@ warpx.fine_tag_hi = 2.e-6 -7.e-6 # Geometry geometry.coord_sys = 0 # 0: Cartesian -geometry.is_periodic = 0 0 # Is periodic? geometry.prob_lo = -30.e-6 -20.e-6 # physical domain geometry.prob_hi = 30.e-6 0.e-6 +# Boundary condition +boundary.field_lo = pml pml +boundary.field_hi = pml pml + # Verbosity warpx.verbose = 1 warpx.do_dive_cleaning = 0 warpx.use_filter = 1 -warpx.do_pml = 1 warpx.do_subcycling = 1 warpx.refine_plasma = 0 warpx.n_current_deposition_buffer = 0 |