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+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "deletable": true,
+ "editable": true
+ },
+ "source": [
+ "# Overview\n",
+ "\n",
+ "This a notebook that inspects the results of a WarpX simulation.\n",
+ "\n",
+ "# Instructions\n",
+ "\n",
+ "Execute the cells below one by one, by selecting them with your mouse and typing `Shift + Enter`"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {
+ "collapsed": false,
+ "deletable": true,
+ "editable": true
+ },
+ "outputs": [],
+ "source": [
+ "# General imports\n",
+ "import glob, sys\n",
+ "# Import numpy and matplotlib\n",
+ "import numpy as np\n",
+ "import matplotlib.pyplot as plt\n",
+ "%matplotlib\n",
+ "# Import yt\n",
+ "import yt\n",
+ "yt.funcs.mylog.setLevel(50) # Deactivate yt verbose\n",
+ "\n",
+ "# Import interactive notebook feature\n",
+ "#from IPython.display import clear_output\n",
+ "from ipywidgets import interact, IntSlider, RadioButtons\n",
+ "\n",
+ "# Find output iterations\n",
+ "file_list = glob.glob('plt?????')\n",
+ "iterations = [ int(file_name[3:]) for file_name in file_list ]"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "deletable": true,
+ "editable": true
+ },
+ "source": [
+ "# Functions to extract and plot the fields"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {
+ "collapsed": false
+ },
+ "outputs": [],
+ "source": [
+ "def extra_data( field, iteration ):\n",
+ " \"\"\"\n",
+ " Extract the 3D array that corresponds to `field` at the \n",
+ " requested iteration, and returns as a `YTarray`, which \n",
+ " can be used exactly like a numpy array.\n",
+ " \"\"\"\n",
+ " ds = yt.load( './plt%05d/' %iteration )\n",
+ " data = ds.covering_grid(level=0, \n",
+ " left_edge=ds.domain_left_edge, \n",
+ " dims=ds.domain_dimensions)\n",
+ " return( data[field] ) "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {
+ "collapsed": false,
+ "deletable": true,
+ "editable": true
+ },
+ "outputs": [],
+ "source": [
+ "def plot_field( iteration, field, slicing_direction='y' ):\n",
+ " # Get the data\n",
+ " field_array = extra_data( field, iteration )\n",
+ " \n",
+ " # Get the position of the edges\n",
+ " ds = yt.load( './plt%05d/' %iteration )\n",
+ " left_edge = ds.domain_left_edge.convert_to_mks()*1.e6\n",
+ " right_edge = ds.domain_right_edge.convert_to_mks()*1.e6\n",
+ "\n",
+ " if slicing_direction == 'x':\n",
+ " n = int( ds.domain_dimensions[0]//2 )\n",
+ " data2d = field_array[n, :, :]\n",
+ " extent = [ left_edge[2], right_edge[2], left_edge[1], right_edge[1] ]\n",
+ " elif slicing_direction == 'y':\n",
+ " n = int( ds.domain_dimensions[1]//2 )\n",
+ " data2d = field_array[:, n, :]\n",
+ " extent = [ left_edge[2], right_edge[2], left_edge[0], right_edge[0] ]\n",
+ " elif slicing_direction == 'z':\n",
+ " n = int( ds.domain_dimensions[2]//2 )\n",
+ " data2d = field_array[:, :, n]\n",
+ " extent = [ left_edge[1], right_edge[1], left_edge[0], right_edge[0] ]\n",
+ " plt.clf()\n",
+ " plt.imshow( data2d, interpolation='nearest', cmap='viridis',\n",
+ " origin='lower', extent=extent )\n",
+ " plt.colorbar()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "deletable": true,
+ "editable": true
+ },
+ "source": [
+ "# Interactive viewer"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {
+ "collapsed": false,
+ "deletable": true,
+ "editable": true
+ },
+ "outputs": [],
+ "source": [
+ "interact(plot_field, \n",
+ " iteration = IntSlider(min=min(iterations), max=max(iterations), step=iterations[1]-iterations[0]),\n",
+ " field = RadioButtons( options=['jx', 'jy', 'jz', 'Ex', 'Ey', 'Ez'], value='jz'),\n",
+ " slicing_direction = RadioButtons( options=[ 'x', 'y', 'z'], value='y') )"
+ ]
+ }
+ ],
+ "metadata": {
+ "anaconda-cloud": {},
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.6.0"
+ },
+ "widgets": {
+ "state": {
+ "5ca3ffc563434f7487da7b1bd657761b": {
+ "views": [
+ {
+ "cell_index": 5
+ }
+ ]
+ }
+ },
+ "version": "1.2.0"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 1
+}