diff options
Diffstat (limited to 'Python/pywarpx')
| -rw-r--r-- | Python/pywarpx/AMReX.py (renamed from Python/pywarpx/BoxLib.py) | 6 | ||||
| -rw-r--r-- | Python/pywarpx/__init__.py | 4 | ||||
| -rw-r--r-- | Python/pywarpx/timestepper.py | 385 |
3 files changed, 391 insertions, 4 deletions
diff --git a/Python/pywarpx/BoxLib.py b/Python/pywarpx/AMReX.py index a15119250..444df3490 100644 --- a/Python/pywarpx/BoxLib.py +++ b/Python/pywarpx/AMReX.py @@ -10,7 +10,7 @@ from .Particles import particles from . import warpxC -class BoxLib(object): +class AMReX(object): def init(self): argv = [] @@ -22,7 +22,7 @@ class BoxLib(object): argv += interpolation.attrlist() argv += particles.attrlist() - warpxC.boxlib_init(argv) + warpxC.amrex_init(argv) def finalize(self, finalize_mpi=1): - warpxC.boxlib_finalize(finalize_mpi) + warpxC.amrex_finalize(finalize_mpi) diff --git a/Python/pywarpx/__init__.py b/Python/pywarpx/__init__.py index 98c26af36..baec3e39e 100644 --- a/Python/pywarpx/__init__.py +++ b/Python/pywarpx/__init__.py @@ -6,5 +6,7 @@ from .Algo import algo from .Langmuirwave import langmuirwave from .Interpolation import interpolation from .Particles import particles -from .BoxLib import BoxLib +from .AMReX import AMReX + +from .timestepper import TimeStepper diff --git a/Python/pywarpx/timestepper.py b/Python/pywarpx/timestepper.py new file mode 100644 index 000000000..71787c7a4 --- /dev/null +++ b/Python/pywarpx/timestepper.py @@ -0,0 +1,385 @@ +import warp +from warp import top +from warp import w3d + +from . import WarpX + +class TimeStepper(object): + + + def onestep(self): + # --- A reference to the instance of the WarpX class + warpx = WarpX.warpx.warpx + mypc = warpx.GetPartContainer() + + self.cur_time = warpx.gett_new(0) + self.istep = warpx.getistep(0) + + #if mpi.rank == 0: + print "\nSTEP %d starts ..."%(self.istep + 1) + + #if (ParallelDescriptor::NProcs() > 1) + # if (okToRegrid(step)) RegridBaseLevel(); + + warpx.ComputeDt() + dt = warpx.getdt(0) + + # --- Advance level 0 by dt + lev = 0 + + # --- At the beginning, we have B^{n-1/2} and E^{n}. + # --- Particles have p^{n-1/2} and x^{n}. + warpx.EvolveB(lev, 0.5*dt) # We now B^{n} + + warpx.FillBoundaryE(lev, False) + warpx.FillBoundaryB(lev, False) + + # --- Evolve particles to p^{n+1/2} and x^{n+1} + # --- Depose current, j^{n+1/2} + warpx.PushParticlesandDepose(lev, self.cur_time) + + mypc.Redistribute() # Redistribute particles + + warpx.EvolveB(lev, 0.5*dt) # We now B^{n+1/2} + + warpx.FillBoundaryB(lev, True) + + warpx.EvolveE(lev, dt) # We now have E^{n+1} + + self.istep += 1 + + self.cur_time += dt + + warpx.MoveWindow(); + + #if mpi.rank == 0: + print "STEP %d ends. TIME = %e DT = %e"%(self.istep, self.cur_time, dt) + + # --- Sync up time + for i in range(warpx.finestLevel()+1): + warpx.sett_new(i, self.cur_time) + warpx.setistep(i, self.istep) + + max_time_reached = ((self.cur_time >= warpx.stopTime() - 1.e-6*dt) or (self.istep >= warpx.maxStep())) + + if warpx.plotInt() > 0 and (self.istep+1)%warpx.plotInt() == 0 or max_time_reached: + warpx.WritePlotFile() + + if warpx.checkInt() > 0 and (self.istep+1)%warpx.plotInt() == 0 or max_time_reached: + warpx.WriteCheckPointFile() + + + + + + + + + + + + + +class TimeStepperFromPICSAR(object): + + def __init__(self, package=None, solver=None, l_debug=False): + self.package = package + self.solver = solver + self.l_debug = l_debug + + def setpackagestepnumber(self, it): + if self.package is not None: + self.package.setstepnumber(it) + + def step(self, n=1, freq_print=10, lallspecl=0): + """ + This function performs a range of Particle-In-Cell iterations + + Inputs: + - n: number of iterations + - freq_print: print frequency + """ + + if (self.l_debug): print("Call step") + + for i in range(n): + if(me == 0): + if top.it%freq_print == 0: + print 'it = %g time = %g'%(top.it, top.time) + + l_first = (lallspecl or (i == 0)) + l_last = (lallspecl or (i == n-1)) + + self.onestep(l_first, l_last) + + if (self.l_debug): print("End step") + + def onestep(self, l_first, l_last): + """ + Perform a single particle-in-cell step + """ + + if (self.l_debug): print("Call onestep") + + # --- Iteration number + self.setpackagestepnumber(top.it) + + # --- call beforestep functions + if (self.l_debug): print("Call beforestep functions") + warp.callbeforestepfuncs.callfuncsinlist() + + # --- gather fields from grid to particles + if (self.l_debug): print("Call Field gathering and particle push") + + # --- push + if l_first: + if self.package is None: + # --- Standard Warp advance + for specie in warp.listofallspecies: + for pg in specie.flatten(specie.pgroups): + for js in range(pg.ns): + self.push_velocity_second_part(js, pg) + self.push_positions(js, pg) + warp.particleboundaries3d(pg, -1, False) + + else: + # --- Particle pusher + if (self.l_debug): print("Call package particle push") + pxr.pxrpush_particles_part2() + + # --- Particle boundary consitions + if (self.l_debug): print("Call package particle boundary conditions") + pxr.particle_bcs() + + if (self.l_debug): print("Call aliasparticlearrays()") + self.aliasparticlearrays() + + else: + if self.package is None: + # --- Standard Warp advance + + for specie in warp.listofallspecies: + for pg in specie.flatten(specie.pgroups): + for js in range(pg.ns): + self.push_velocity_full(js, pg) + self.push_positions(js, pg) + + warp.particleboundaries3d(pg, -1, False) + + else: + # --- Particle pusher + if (self.l_debug): print("Call package particle pusher") + pxr.field_gathering_plus_particle_pusher() + + # --- Particle boundary conditions + if (self.l_debug): print("Call package particle boundary conditions") + pxr.particle_bcs() + + self.aliasparticlearrays() + + # --- Particle sorting + if (self.l_debug): print("Call Particle Sorting") + if self.package is not None: + # --- This should be a function installed before load rho + pxr.particle_sorting_sub() + + # --- call beforeloadrho functions + if (self.l_debug): print("Call beforeloadrho functions") + warp.beforeloadrho.callfuncsinlist() + + pgroups = [] + for specie in warp.listofallspecies: + pgroups += specie.flatten(specie.pgroups) + + self.pgroups = pgroups + + # --- Call user-defined injection routines + if (self.l_debug): print("Call user-defined injection routines") + warp.userinjection.callfuncsinlist() + + xgriddiff = w3d.xmmin - pxr.xmin + ygriddiff = w3d.ymmin - pxr.ymin + zgriddiff = w3d.zmmin - pxr.zmin + + if (xgriddiff != 0 or ygriddiff != 0 or zgriddiff != 0): + pxr.pxr_move_sim_boundaries(xgriddiff, ygriddiff, zgriddiff) + + + if (self.l_debug): print("Call loadrho") + self.solver.loadrho(pgroups = pgroups) + if (self.l_debug): print("Call loadj") + self.solver.loadj(pgroups = pgroups) + + if (self.l_debug): print("Call dosolve") + self.solver.dosolve() + + if self.package is None: + for specie in warp.listofallspecies: + for pg in specie.flatten(specie.pgroups): + for js in range(pg.ns): + self.fetcheb(js, pg) + if l_last: + self.push_velocity_first_part(js, pg) + + else: + if l_last: + if (self.l_debug): print("Call package push particles 1") + pxr.pxrpush_particles_part1() + + # --- update time, time counter + top.time += top.dt + if top.it%top.nhist == 0: +# zmmnt() + minidiag(top.it, top.time, top.lspecial) + top.it += 1 + + # --- Load balance function should be installed after step + + # --- call afterstep functions + if (self.l_debug): print("Call callafterstepfuncs.callfuncsinlist()") + warp.callafterstepfuncs.callfuncsinlist() + + + # --- The following methods use the standard Warp routines + def fetcheb(self, js, pg=None): + if self.l_verbose:print me, 'enter fetcheb' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + w3d.pgroupfsapi = pg + w3d.ipminfsapi = pg.ins[js] + w3d.npfsapi = pg.nps[js] + pg.ex[il:iu] = 0. + pg.ey[il:iu] = 0. + pg.ez[il:iu] = 0. + pg.bx[il:iu] = 0. + pg.by[il:iu] = 0. + pg.bz[il:iu] = 0. + self.fetche() + self.fetchb() + w3d.pgroupfsapi = None + + def push_velocity_full(self, js, pg=None): + if self.l_verbose:print me, 'enter push_velocity_full' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + if pg.lebcancel_pusher: + warp.ebcancelpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], top.dt, 0) + else: + # --- push velocity from electric field (half step) + warp.epush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt) + # --- update gamma + self.set_gamma(js, pg) + # --- push velocity from magnetic field + warp.bpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], top.dt, top.ibpush) + # --- push velocity from electric field (half step) + warp.epush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt) + # --- update gamma + self.set_gamma(js, pg) + + if self.l_verbose:print me, 'exit push_velocity_first_part' + + def push_velocity_first_part(self, js, pg=None): + if self.l_verbose:print me, 'enter push_velocity_first_part' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + if pg.lebcancel_pusher: + warp.ebcancelpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], top.dt, 1) + else: + # --- push velocity from electric field (half step) + warp.epush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt) + # --- update gamma + self.set_gamma(js,pg) + # --- push velocity from magnetic field + warp.bpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt, top.ibpush) + + if self.l_verbose:print me, 'exit push_velocity_first_part' + + def push_velocity_second_part(self, js, pg=None): + if self.l_verbose:print me, 'enter push_velocity_second_part' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + if pg.lebcancel_pusher: + warp.ebcancelpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], top.dt, 2) + else: + # --- push velocity from magnetic field + warp.bpush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], pg.gaminv[il:iu], + pg.bx[il:iu], pg.by[il:iu], pg.bz[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt, top.ibpush) + # --- push velocity from electric field (half step) + warp.epush3d(np, pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], + pg.ex[il:iu], pg.ey[il:iu], pg.ez[il:iu], + pg.sq[js], pg.sm[js], 0.5*top.dt) + # --- update gamma + self.set_gamma(js, pg) + + if self.l_verbose:print me, 'exit push_velocity_second_part' + + def set_gamma(self, js, pg=None): + if self.l_verbose:print me, 'enter set_gamma' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + # --- update gamma + warp.gammaadv(np, pg.gaminv[il:iu], pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], top.gamadv, top.lrelativ) + + if self.l_verbose:print me, 'exit set_gamma' + + def push_positions(self, js, pg=None): + if self.l_verbose:print me, 'enter push_positions' + if pg is None: + pg = top.pgroup + np = pg.nps[js] + if np == 0: return + il = pg.ins[js] - 1 + iu = il + pg.nps[js] + warp.xpush3d(np, pg.xp[il:iu], pg.yp[il:iu], pg.zp[il:iu], + pg.uxp[il:iu], pg.uyp[il:iu], pg.uzp[il:iu], + pg.gaminv[il:iu], top.dt) + + if self.l_verbose:print me, 'exit push_positions' + + + + + + + + |