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-rw-r--r--Source/Diagnostics/ElectrostaticIO.cpp123
1 files changed, 123 insertions, 0 deletions
diff --git a/Source/Diagnostics/ElectrostaticIO.cpp b/Source/Diagnostics/ElectrostaticIO.cpp
new file mode 100644
index 000000000..8ed205b1a
--- /dev/null
+++ b/Source/Diagnostics/ElectrostaticIO.cpp
@@ -0,0 +1,123 @@
+#include <AMReX_MGT_Solver.H>
+#include <AMReX_stencil_types.H>
+
+#include <WarpX.H>
+#include <WarpX_f.H>
+
+namespace
+{
+ const std::string level_prefix {"Level_"};
+}
+
+using namespace amrex;
+
+void
+WarpX::
+WritePlotFileES (const amrex::Vector<std::unique_ptr<amrex::MultiFab> >& rho,
+ const amrex::Vector<std::unique_ptr<amrex::MultiFab> >& phi,
+ const amrex::Vector<std::array<std::unique_ptr<amrex::MultiFab>, 3> >& E)
+{
+ BL_PROFILE("WarpX::WritePlotFileES()");
+
+ VisMF::Header::Version current_version = VisMF::GetHeaderVersion();
+ VisMF::SetHeaderVersion(plotfile_headerversion);
+
+ const std::string& plotfilename = amrex::Concatenate(plot_file,istep[0]);
+
+ amrex::Print() << " Writing plotfile " << plotfilename << "\n";
+
+ const int nlevels = finestLevel()+1;
+
+ {
+ Vector<std::string> varnames;
+ Vector<std::unique_ptr<MultiFab> > mf(finest_level+1);
+
+ for (int lev = 0; lev <= finest_level; ++lev) {
+ int ncomp = 5;
+ const int ngrow = 0;
+ mf[lev].reset(new MultiFab(grids[lev], dmap[lev], ncomp, ngrow));
+
+ int dcomp = 0;
+ amrex::average_node_to_cellcenter(*mf[lev], dcomp, *rho[lev], 0, 1);
+ if (lev == 0) {
+ varnames.push_back("rho");
+ }
+ dcomp += 1;
+
+ amrex::average_node_to_cellcenter(*mf[lev], dcomp , *E[lev][0], 0, 1);
+ amrex::average_node_to_cellcenter(*mf[lev], dcomp+1, *E[lev][0], 0, 1);
+ amrex::average_node_to_cellcenter(*mf[lev], dcomp+2, *E[lev][0], 0, 1);
+
+ if (lev == 0) {
+ varnames.push_back("Ex");
+ varnames.push_back("Ey");
+ varnames.push_back("Ez");
+ }
+ dcomp += 3;
+
+ amrex::average_node_to_cellcenter(*mf[lev], dcomp, *phi[lev], 0, 1);
+ if (lev == 0) {
+ varnames.push_back("phi");
+ }
+ dcomp += 1;
+ }
+
+ Vector<std::string> rfs(1,"raw_fields"); // pre-build raw_fields/
+ amrex::WriteMultiLevelPlotfile(plotfilename, finest_level+1,
+ amrex::GetVecOfConstPtrs(mf),
+ varnames, Geom(), t_new[0], istep, refRatio(),
+ "HyperCLaw-V1.1",
+ "Level_",
+ "Cell",
+ rfs);
+ }
+
+ {
+ const std::string raw_plotfilename = plotfilename + "/raw_fields";
+ const int nlevels = finestLevel()+1;
+ for (int lev = 0; lev < nlevels; ++lev) {
+ const DistributionMapping& dm = DistributionMap(lev);
+
+ MultiFab Ex( E[lev][0]->boxArray(), dm, 1, 0);
+ MultiFab Ey( E[lev][1]->boxArray(), dm, 1, 0);
+ MultiFab Ez( E[lev][2]->boxArray(), dm, 1, 0);
+ MultiFab charge_density(rho[lev]->boxArray(), dm, 1, 0);
+ MultiFab potential(phi[lev]->boxArray(), dm, 1, 0);
+
+ MultiFab::Copy(Ex, *E[lev][0], 0, 0, 1, 0);
+ MultiFab::Copy(Ey, *E[lev][1], 0, 0, 1, 0);
+ MultiFab::Copy(Ez, *E[lev][2], 0, 0, 1, 0);
+ MultiFab::Copy(charge_density, *rho[lev], 0, 0, 1, 0);
+ MultiFab::Copy(potential, *phi[lev], 0, 0, 1, 0);
+
+ VisMF::Write(Ex, amrex::MultiFabFileFullPrefix(lev, raw_plotfilename, level_prefix, "Ex"));
+ VisMF::Write(Ey, amrex::MultiFabFileFullPrefix(lev, raw_plotfilename, level_prefix, "Ey"));
+ VisMF::Write(Ez, amrex::MultiFabFileFullPrefix(lev, raw_plotfilename, level_prefix, "Ez"));
+ VisMF::Write(charge_density, amrex::MultiFabFileFullPrefix(lev, raw_plotfilename, level_prefix, "rho"));
+ VisMF::Write(potential, amrex::MultiFabFileFullPrefix(lev, raw_plotfilename, level_prefix, "phi"));
+ }
+ }
+
+ Vector<std::string> particle_varnames;
+ particle_varnames.push_back("weight");
+
+ particle_varnames.push_back("momentum_x");
+ particle_varnames.push_back("momentum_y");
+ particle_varnames.push_back("momentum_z");
+
+ particle_varnames.push_back("Ex");
+ particle_varnames.push_back("Ey");
+ particle_varnames.push_back("Ez");
+
+ particle_varnames.push_back("Bx");
+ particle_varnames.push_back("By");
+ particle_varnames.push_back("Bz");
+
+ mypc->Checkpoint(plotfilename, true, particle_varnames);
+
+ WriteJobInfo(plotfilename);
+
+ WriteWarpXHeader(plotfilename);
+
+ VisMF::SetHeaderVersion(current_version);
+}