| Age | Commit message (Collapse) | Author | Files | Lines |
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* Gaussian Beam PICMI: Add openPMD Argument
Add an `--diagformat` option to switch between plotfiles and openPMD
for the Gaussian Beam PICMI example.
* CI: openPMD + PICMI on Windows
* Regression Test: Add openPMD PICMI
* format -> warpx_format
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* Use parser for more input parameters
* Fix PSATD compilation and apply suggestions from code review
* Avoid out of bound array access for num_particles_per_cell_each_dim
* Fix few input files with respect to num_particles_per_cell_each_dim
* Fix get that incorrectly became query
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* Remove unused function
* Remove `focused` and `projected` for rigid particles
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* added tunable particle reflection from absorbing domain boundaries
* extended picmi.py to allow setting boundary reflection coefficients and added a CI test for the reflection implementation
* allow R(E) to be specified, except for embedded boundaries
* changed approach for particle reflection, now the ParticleBoundaries object will hold the reflection coefficient; reflection from EBs not implemented
* added functionality to reflect from EB; still needs to be tested for accuracy
* added support for energy dependent reflection models for domain boundaries
* fixed at least one issue causing CI fails - building reflection model parsers for not physical particle containers
* switched reflection coefficients to be functions of the velocity component perpendicular to the boundary rather than energy
* reverted initial work on reflecting from EBs
* changed naming convention for new CI test for particle reflection
* switched useMPI back to 1 in test
* breaking changes while trying to sort out GPU issue
* fixed issue with CUDA compilation - hopefully :)
* various code improvements from PR review suggestions
* fix of major issues
* no need to parse the reflection models at every step
* skip particles that are already flagged for removal in ApplyBoundaryConditions
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* Move QEDEvents() before OneStep functions
* Update BW and QS automated tests
* Fix a couple of bugs
* Update benchmarks
* Forgot to update one benchmark value
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* Added wrapper to get number of particle species tracked by the scraper
Not sure if this is going to be useful, but it demonstrates a method to get information
from the ParticleBoundaryBuffer into Python.
* Stubbed out the main wrapper functions
* Added parameters to wrapper
* Added wrapper for getting the number of particles scraped of a species on a boundary
* added picmi arguments to scrape particles at the domain boundary
* Added wrapper to get the full particle buffer into python
* rearanged the getBuffer properties code a little
* Added docstrings +other suggested changes
* Added num_particles_impacted_boundary docstring
* fixed mistake in docstring
* Changed boundary parameter to be a string for clarity
* Fixed issue with the boundary parameter for scraping
* Fixed issue with the boundary input for scraping stats wrapper
* Added demonstration of particle scraping wrapper
* Added analysis.py file
* Fix typo in one of the dimension maps
Co-authored-by: Roelof Groenewald <40245517+roelof-groenewald@users.noreply.github.com>
* Added before esolve to warpx evolve
* added test for the scraped particle buffer wrappers
* Moved python PICMI particle boundary scrape test
* Renamed test file to the correct name
* Removed old test
* added special functionality to get the timestep at which particles were scraped
* removed debug print
* added python wrapper for the clearParticles() function of the scraper buffer
* added special wrapper function to get the timesteps at which the particles in the boundary buffer were scraped
* updated test to match the non-PICMI test for the particle scraper buffer
* Fix uncaught rebase mistake
* re-activated picmi test of accessing the scraped particle buffers via python
* added documentation for the new parameters involved in the scraped particle buffer and fixed remaining issue with picmi test
* changes requested during code review
Co-authored-by: mkieburtz <michaelkieburtz@gmail.com>
Co-authored-by: Roelof <roelof.groenewald@modernelectron.com>
Co-authored-by: Roelof Groenewald <40245517+roelof-groenewald@users.noreply.github.com>
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* adding base implementation of the conformal solver
* adding some preprocessor directives
* qualifying the isnan's correctly
* getting rid of some unused fields
* computing S_stab on the fly
* using empty in length check
* Source/FieldSolver/FiniteDifferenceSolver/EvolveB.cpp
* replaced a looponcpu with a parallelfor
* trying to not pass lending/borrowing info by reference in evolveB
* passing data using dataPtr
* converting inds into a device vector
* simplifying some +=
* extracting the inds BaseFabs as DataPtr
* Revert "extracting the inds BaseFabs as DataPtr"
This reverts commit bc709d2fcaa347c119514de79a3f57169a05af65.
* implementing new way ogf handling cell extensions (gpu compatible)
* fixing some white spaces
* removed a typo
* made a function static
* tidying up
* tidying up
* getting rid of the rho vector
* moving the rho update to evolveE
* refectoring the cell extension
* small chenge in input parameters
* updating WarpX.H
* bug fix
* fixing another bug
* rotating the cube
* updated gitignore
* using the conformal soler in the cube test
* fixing the signature of a function
* trying to fix the setVal problem
* Revert "trying to fix the setVal problem"
This reverts commit c7d0e5e3709b730ff570183b2a6df5f587ca4640.
* trying to fix the setVal problem
* cleaning some comments
* removing an abort in device code
* Including geometric information in the external field initializer
* cleaned up the test
* moving the geometric data initialization before the external fields initialization
* changing way of saving info about intruded cells
* fixed some white spaces
* Using S_mod instead of S_red and S_enl
* substituting a std::vector with amrex::Array1D
* bug fix in the uint8_t -> coords maps
* Condensed ect cell info into one single MultiFab
* fixing some includes
* fixing some more includes
* fixed a typo
* making some functions available in gpu code
* using tilebox instead of validbox for the geometry initialization
* communicating the geometric info in the guard cells
* fixing the guard cells initialization for ect
* fixing an unused parameter
* fixing an unused parameter
* ignored some unused variables when EB is not supported
* cleaning up
* cleaning up
* ignored some unused variables when EB is not supported
* evolving rho just for ect
* handling some more unused variables
* removing some white spaces
* adding the rotated cube test
* removed some white spaces
* change cells into faces
* small fix in unused parameters
* fixed a comment
* for safety for now just initialize the geometric data when lev==maxLevel
* adding some preprocessor directives to isolate EB code
* updating Makefile stuff
* Improving the rotated cube test
* bug fix in mesh refinement
* fixing boundary conditions in rotated cube test
* deactivating MPI in rotated cube test
* activating mpi in test
* improving outputs of cells extension
* improved the documentation
* Update Source/EmbeddedBoundary/WarpXInitEB.cpp
Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
* Update Source/EmbeddedBoundary/WarpXInitEB.cpp
Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
* Removed some obsolete isnan's
* undone change to gitignore
* adding some missing AMREX_GPU_DEVICEs
* Changing some amrex::Real(0) into 0.
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Making some variables const
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Adding amrex:: to some ignore_unused
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Enhancing readability of some parallelfor's
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Removed some unecessary includes
* Fixing some tags
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Fixing the function CountExtFaces
* added a comment for Rhofield
* Fixed a typo in CountExtCells
* trying to remove accesses to private members in ComputeEdgeLengths
* making some functions public
* undoing some useless changes
* undoing some useless changes
* adding some AMREX_GPU_DEVICEs
* adding some unused variables
* adding some AMREX_GPU_DEVICEs to fix warnings
* fixing relative error
* Making several variables const
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Fixed a comment
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* changing some double to amrex::Real
* removing commented lines
* changing some double to amrex::Real
* removing commented lines
* inizialing nelems_x,y,z to avoid a warning
* Fixing number of cells
* Adding missing analysis routine in rotated cube test
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Making some variables constexpr
Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
* Improving some reduce operations
Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
* reading time directly from the output
* fixed a few data types
* fixing another int
* Replacing or->||, and->&&, not->!
* Adding license info
* Adding a white space
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* removed some unused imports
* Moving the doxygen documentation
* Including AMReX_LayoutData.H
* removing some useless parameters
* adding ect solver to the doc
* Removing some useless reductions
* Small change for consistency
* Handling the resizing of arrays
* Handling correctly the resing of arrays
* Fixing some whitespaces
* Fixing an indentation
* Improving a comment
* Removed a useless initialization
* Renamed Rhofield to ECTRhofield
* Renamed Rhofield to ECTRhofield
* Added some if conditions to isolate some EB related code
* Improved some comments
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Made some functions not member of WarpX anymore
* Isolated some EB-only code
* Isolated some EB-only code
* Using the square brackets to access vectors
* Ignoring some unused variables
* Bug fix in initialization
* Removed a redundant if
* Using enumeration for connectivity and improved names
* Added a comment
* added a few comments
* Removed some useless template parameters
* Printing some info only in verbose mode
* Revert "Removed some useless template parameters"
This reverts commit 2c527980e6872c0212767c27f00e2b53ecbcfd0a.
* Fixed a bug with the neighbours enumeration
* Initializing geom data alsoo in the ghost cells
Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* Some prelimary refactoring.
* missing header
* implement scraping particles that leave the domain boundaries into buffers
* fix tabs
* missing return
* merging
* remove redefinition
* functor to work around cuda bug.
* handle 2D
* Add support for EB buffer
* protect for AMREX_USE_EB, static_assert that EB and RZ aren't both on.
* fix unused
* add inputs file
* add test
* fix bugs, remove print
* fix test
* fix test path.
* remove no-op code
* adding clear particles method
* attempt at adding time stamp
* Use integer step number instead of physical time to timestamp particles; also put shared code into named functor.
* move call to before apply boundary conditions
* use more descriptive inputs parameter
* Update Source/Particles/ParticleBoundaryBuffer.cpp
* fix comp bug
* move CopyAndTimestamp to cpp file
* also move IsOutsideProblemDomain functor
* Rename to m_particle_boundary_buffer
- Name: currently only used for boundary scraping
- Singular: only one instance
* Fix missing EOF newline
* Typo: author
* Param Read / Init: Cleanup For
Simplify
Co-authored-by: Roelof Groenewald <40245517+roelof-groenewald@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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By accident, the 2nd test did not use plotfile output.
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This is renaming the runtime added optical depth scalars for QED
physics just to create the same names in plotfile and openPMD output.
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* ChecksumAPI: yt 4+ ds.force_periodicity()
Mitigate issues of the form
```
RuntimeError: yt attempted to read outside the boundaries of a non-periodic domain along dimension 0.
Region left edge = -7.5e-06 code_length, Region right edge = 7.500000000000002e-06 code_length
Dataset left edge = -7.5e-06 code_length, Dataset right edge = 7.5e-06 code_length
This commonly happens when trying to compute ghost cells up to the domain boundary. Two possible solutions are to select a smaller region that does not border domain edge (see https://yt-project.org/docs/analyzing/objects.html?highlight=region)
or override the periodicity with
ds.force_periodicity()
```
* make yt3 compatible
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* support only new boundary interface. set pml flags to 0 as default
* use new boundary interface in Examples/Modules/
* use new boundary interface in the input for tests in Examples/Physical_applications
* use new boundary interface in the input for tests in Examples/Tests
* use new bc
* fix typo
* fix typo
* Update Examples/Tests/SingleParticle/inputs_2d
* fix bc in input
* specific bc for electrostatic inputs
* resetting benchmark for PEC particle CI test after fixing the default pml flags from 1 to 0
* Update Examples/Physics_applications/laser_acceleration/inputs_2d_rz
* remove documentation on previous boundary input
* Comment to clarify where in the code is_periodic is appended and how it is defined
* add default parameters for BC in doc
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* Infrastructure for interacting particles with embedded boundary walls
* remove debug prints
* protect with AMREX_USE_EB
* fix for 2D XZ
* also update level set when regridding
* rename level set to 'DistanceToEB'
* add docstring for scrape particles.
* add assertion on maxLevel() since EB does not work with mesh refinement right now.
* m_eb_if_parser no longer exists
* add test for particle aborption at embedded boundaries
* fix bug I introduced refactoring
* add new test to suite
* fix test names
* fix 2D
* rookie python error
* fix filename in test
* fix script
* fix unused
* make sure we turn EB on in test
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* Add possibility to start and stop moving window
* Update Benchmark laserInjection_2d
* Update Source/Diagnostics/BTDiagnostics.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* modification of the MoveWindow function in the python interface
* False to True for move j in python function
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Filter Always ON by Default
* Fix CI Tests
* Update Docs
* Fix CI Test dirichletbc
* Default WarpX::use_filter = 0 with RZ FDTD, Add Warnings
* Set WarpX::use_kspace_filter = true by Default, too
* RZ: Fix Bug with PSATD Binary and FDTD Runtime Solver
* Default use_kspace_filter = true, Fix Runtime Issue with Rho Functor
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* added ReadBCParams() function call to python execution and added a test of the electrostatic solver executing from python
* added separate specification of particle boundary conditions in picmi setup and adjusted the inputs for existing tests to follow the new practice
* updated input for rz PICMI test and renamed the electrostatic test to follow standard practice
* added arguments for particle boundary conditions to Langmuir RZ test
* added dictionary to picmi.py to map from picmistandard field boundary condition specifications to that of WarpX
* fixes for failing unit tests; added key, pair 'none' to picmi dictionary of field BCs
* also using 'none' for upper boundary condition for RZ test Python_Langmuir_rz_multimode
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If `warpx.eb_implicit_function = ...` is present in input parameters, Parser
will be used to initialize EB. For example,
```
warpx.eb_implicit_function = "max(max(max(x-0.5,-0.5-x), max(y-0.5,-0.5-y)), max(z-0.5,-0.5-z))"
```
specifies a box with boundaries at x=+-0.5, y=+-0.5 and z=+-0.5 and regular
domain inside the box.
```
warpx.eb_implicit_function = "-(x**2+y**2+z**2-0.2**2)"
```
specifies a solid sphere at (0,0,0) with a radius of 0.2.
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Add tests for the new BTD diagnostics, so that parallely working
developers can easier test this.
Currently covered features:
- field BTD (particles are still WIP)
- openPMD & plotfiles
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* Implemented query and getArrWithParser
* Updated parameters.rst regarding expressions for multiple floats
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* Define New Input Parameter interpolation.shape_factors_order
* Use New Input Parameter, Remove Obsolete Ones
* Add New Input Parameter to PICMI Interface
* Update Docs, Use New Input Parameter in Remaining Input Files
* Cleaning
* New Name: algo.particle_shape
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simulations (#1761)
* Update copyright notices
* allow specification of boundary potentials at runtime when using Dirichlet boundary conditions in the electrostatic solver (labframe)
* added parsing to boundary potentials specified at runtime to allow time dependence through a mathematical expression with t (time)
* updated to picmistandard 0.0.14 in order to set the electrostatic solver convergence threshold
* update docs
* various changes requested during PR review
* fixed issue causing old tests to break and added a new test for time varying boundary potentials
* possibly a fix for the failed time varying boundary condition test
* changed permission on the analysis file for the time varying BCs test
* switched to using yt for data analysis since h5py is not available
* made changes compatible with PR#1730; changed potential boundary setting routine to use the ParallelFor construct and set all boundaries in a single call
* fixed typo in computePhiRZ
* updated docs and fixed other minor typos
* fixed bug in returning from loop over dimensions when setting boundary potentials rather than continuing
* changed to setting potentials on domain boundaries rather than tilebox boundaries and changed picmi.py to accept boundary potentials
* now using domain.surroundingNodes() to get the proper boundary cells for the physical domain
* fixed typo in variable name specifying z-boundary potential
* changed boundary value parameter for Dirichlet BC to boundary.field_lo/hi and changed setPhiBC() to only loop over the grid points when a boundary value has changed
* switched specifying potential boundary values though individual inputs of the form boundary.potential_lo/hi_x/y/z and incorporated the new BC formalism through FieldBoundaryType::Periodic and FieldBoundaryType::PEC rather than Geom(0).isPeriodic(idim)
* removed incorrect check of whether the potential boundary values are already correct, also had to change the input to test space_charge_initialization_2d to comply with the new boundary condition input parameters and finally changed permissions to analysis_fields.py file for the embedded boundary test since it was failing
* remove line from WarpX-tests.ini that was incorrectly added during upstream merge
* changed input file for relativistic space charge initialization to new boundary condition specification
* fixed outdated comment and updated documentation to reflect that the Dirichlet BCs can also be specified when using the relativistic electrostatic field solver
* moved call to get domain boundaries inside the loop over levels
* cleaned up the code some by using domain.smallEnd and domain.bigEnd rather than lbound and ubound
* added check that a box contains boundary cells before launching a loop over that box cells to set the boundary conditions
Co-authored-by: Peter Scherpelz <peter.scherpelz@modernelectron.com>
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* Added staircased embedded boundaris to the YEE solver
* adding spherical resonating cavity test
* adding functions for fields initialization
* style adjustments
* fixing tabs
* fixed name of analysis script
* fixed name of analysis script
* fixed a few wrong preprocessor directives
* workaround for missing boost
* Revert "workaround for missing boost"
This reverts commit 601f9eb2ec6f8c2100304379b2bea1c6cf9d1851.
* another workaround for missing boost
* getting rid of boost by depending on c++17
* Removed a few unused variables
* adding USE_EB to addToCompileString for EB testing
* removed tabs
* fixing the inputs name for EB sphere test
* shortened the test
* zero padding the names of the images
* adjusted two for loops
* removed some unused variables
* improving the fields initialization
* removed the sphere test and implemented the cube test
* fixed edges lengths computation and added comments
* Fixed the case of all_regular geometries
* fixing a bug that was breaking some tests
* adding test folder
* fixed the default values for the EB cube test
* simplified the analysis script
* fixed cubic resonator default results
* inputting the plot file name from command line
* fixing the diag name
* Fixed a bug in edges initialization
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Adding comments to the staircased yee solver (thanks Remi)
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* fixed the cube resonator test
* removed an unused import
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* initial work to test QED+openPMD output
* work towards openPMD tests
* added checksums
* fixed bug
* fix style
* add space at end
* fixed bug
* improved analysis scripts
* remove unused import
* fix bug
* comment out checksum calculation for openPMD output
* removed checksums for opmd tests
* fix bug in handling additional real components, such as optical depths
* install also openpmd-api python module for CI tests
* fixed bug in openPMD analysis script
* install openPMD python API only if needed
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* Read boundary and set periodicity, enumerate BC types, added support for periodic
* separate particle and field boudnary structs
* Update comment for particle struct
* default pml is 0, and reset lo, hi, and do_pml to 1
* turn on pml for MR
* eol
* remove duplication
* resolving commit conflict
* explicitly setting pml_HI_MR
* default pml lo and hi to 0, and set MR pml lo and hi to the domain values if fine patch coincides with domain boundary
* set lo and hi flag for pml when do pml = 1 and domain is non-periodic
* remove commented line
* add doc
* Update Source/Utils/WarpXUtil.cpp
remove empty line
* Apply suggestions from code review
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Docs/source/usage/parameters.rst
lower case for input
* add do_pml flags for IonAcc2d and PlasmaMirror
* add pml = true in PICMI for gaussian beam and plasma acceleration
* pml is the default field BC
* adding temporary defaults for field and particle BC using periodicity
* fix temp initialization
* set default to pec if input sets pml to 0
* fix typo
* logic for both old and new pml interface
* fix eol
* change examples to original pml input with default values
* Update Docs/source/usage/parameters.rst
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* fix comments
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Docs: fix .rst list
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
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* add delay to txye laser
* add delay in test
* fix bug
* fixed bug
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* add option to pass a0 instead of e_max for the laser
e_max xor a0 must be specified
* update doc for laser a0
* a0: Update Examples
Using all options so they are tested.
* reset benchmarks (precision E0->a0)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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Remove the three locations where an input file sets
`warpx.do_dynamic_scheduling=0`. This is only needed for CI
`.ini` files to ensure determinism and should not be used in
production.
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* Add CI coverage for the plotfile particle filter function
* Minor fix in analysis script
* Test all 3 particle filters in 2D/3D/RZ
* Dirty trick to deal with same ID from multiple MPI ranks + enforce 100 characters per line rule
* Fix CI when running on a single MPI rank
* Add new module to avoid duplicate code
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* Load balance params now input as algo.
* load balance params to algo
* Backward compatibility and knapsack_factor_doc
* Update Docs/source/running_cpp/parameters.rst
* backward_strings
* picmi
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* removed redundant do_qed option in inputfile
* fixed bug
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* Unify intervals notation
* Fix diagnostic intervals with PICMI
* Use new syntax in updated Larmor test
* Update PICMI to comply with the standard
* Update new hybrid test
* Update particles_in_PML test input files
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* Add the possibility to disable Schwinger in part of the domain
* Update checksum benchmarks
* Only query ymin and ymax in 3D
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* improved 2D laser injection test
* correct typo in documentation
* fix non-ascii character
* fixed unused variables
* fixed missing checksum
* fix non-ascii character
* updated benchmark
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* fixed check in analysis script
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* reorganized main function
* added a comment
* Update Examples/Modules/laser_injection/analysis_2d.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* fix calculation of dz
* fixed bug
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
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(#1385)
* Add option to only resample cells with high enough number of macroparticles
* Apply suggestions from code review
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* First working version of tests
* Add comments to test
* Add test in WarpX-test.ini and initial checksum json file
* Add resampling to input parameters doc
* Uncomment lines about checksum in analysis script + Fix minor typos
* Add momentum in plotfiles (for checksum) + Fix minor typoes
* Remove particle_theta from checksum json file
* Remove rho from checksum json file
* Fix syntax error in checksum json file
* Add benchmark values
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Have one Resampling object per species
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Initial work to couple improved QED module to WarpX
* WIP to couple with WarpX the new QED library
* Continuing work to couple the new version of the QED library with WarpX
* progress towards completing coupling with new version of QED library
* WarpX coupled with new version of QED library
* default behavior is to display table generation progress
* some host device functions are now device only
* fixed bug
* bugfixing
* updating tests
* updated test
* updated test
* added initial version of tests (not working)
* added check and updated a comment
* fixed bug
* added inputfiles and analysis script for new BW tests
* test for BW process are ready
* modified test
* make lgtm happy
* removed TABs
* initial work to add QS tests (not working)
* removed old tests
* fixed bug in script
* changed position of evolution of optical depth
* progress with QSR tests
* improved test
* very low energy photons are always eliminated
* added tests to regression suite
* improved test
* improved tests
* removed redundant parameter
* removed trailing white space
* updated documentation
* fix lgtm warnings
* fixed missing check on chi parameter
* fixed missing check on chi parameter & bugfixing
* improved comments
* increased tolerance in tests
* updated units in test
* now test succeds if the error is extremely small
* updated checksums
* fixed bug
* fixed some unused or uninitialized variables warnings
* now using ignore_unused instead of commenting out some variables
* fixed warnings
* partial fix of a test
* fixed test
* fixed test
* added checksums
* fixed tests
* fixed benchmark for qed_schwinger2
* removed checksums for tests which do no exist anymore
* fixed checksums for several qed tests
* fixed checksums for several qed tests
* fixed checksums
* removed unwanted checksum
* fixed checksum
* removed files which should have been deleted
* add some const
* [skip ci] added some docstrings and some const
* Update Source/Particles/ElementaryProcess/QEDInternals/BreitWheelerEngineWrapper.H
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/ElementaryProcess/QEDInternals/BreitWheelerEngineWrapper.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/ElementaryProcess/QEDInternals/QuantumSyncEngineWrapper.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* added some docstrings and some const
* replaced ManagedVectors with DeviceVectors
* Update Source/Particles/ElementaryProcess/QEDInternals/QedWrapperCommons.H
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* added some const
* removed unwanted assert
* updated comment
* changed position of GPU synchronization directive
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/breit_wheeler/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/breit_wheeler/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* add do_plot option to some analysis scripts
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* uncomment a line
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* simplified input scripts for BW tests
* simplified input scripts for QS tests
* removed unwanted files
* simplified analysis script
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* reverted modification to schwinger analysis script
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* remove outdated comment
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* fix warnings
* made test more robust
* reset benchmark for qed_breit_wheeler_2d
* fixed bug in test
* make test more robust
* made test more robust
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update run_test.sh
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Tools <warpx@lbl.gov>
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Input: Remove n<something> options
The information in
- lasers.nlasers
- particles.nspecies
- collisions.ncollisions
is redundant with their `<...>.names` counter-part and requires users
to change info at two locations. We just remove this now since we can
query the size of names automatically in the parser.
* Examples: remove n<something>
Removes:
- lasers.nlasers
- particles.nspecies
- collisions.ncollisions
from examples.
* QED: Update nspecies
* Removed nspecies and nlasers from the Python interface
Co-authored-by: Dave Grote <grote1@llnl.gov>
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* Rename Input to `algo.maxwell_solver`
Rename the input option `algo.maxwell_fdtd_solver` to
`algo.maxwell_solver` and throw a useful error message for users
using the old option.
This is in preparation to unify FDTD and PSATD input control to
reduce mutually exclusive binary variants of WarpX.
* MW Solver Name: Update Examples
Update all example to use the new algo.maxwell_solver option.
* Fix typo in comutation of dt
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* Added automated test for dive cleaning
* Add analysis script
* Include test in automated suite
* Add 3D test
* Modify script so that it could run in 3d
* Reduce tolerance for 3D test
* Set benchmarks for divE cleaning tests
* Remove unused parameter
Co-authored-by: Tools <warpx@lbl.gov>
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* add functor for doing the tmp particles copy for the back-transformed diagnosti
* merge the particle push options into one kernel
* EOL
* fix assertion
* add a FieldGatherandPushPX method to PhysicalParticleContainer
* handle offset in copyAttribs
* allow this functor to be constructed even it we aren't doing the back transformed diagnostics
* EOL
* update the overloads of PushPX for the Photon and RigidInjected ParticleContainers
* function for dispatching the right field gather
* init this val to 0.0
* fix some typos
* handle scaling the fields for rigid injection
* EOL
* don't need to get pointers to E and B arrays in PushPX any more.
* actually I can't remove these yet
* EOL
* variable order bug
* move the QED stuff to the proper place
* EOL
* make sure we don't build these functors unless the runtime options are toggled
* EOL
* perform the field gather prior to the photon particle push
* remove E and B components and FieldGather methods. Reimplement PushP for rigid injected and physical particles
* update ionization to do field gather inline
* remove E and B from the particle diagnostics
* don't write E or B in these tests for particles
* add missing files
* remove EB from the Regtest ini file too
* no need to do this twice
* important typo
* also do the gather inline for the QED processes that need to
* move these sources inside ifdef for QED
* fix bug in RZ
* remove some fields from the Python tests.
* remove all particle E and B comps from json benchmarks
* don't assert that Ey is the langmuir output
* remove uy from this output
* update test
* restore the mesh fields I turned off by mistake
* turn off field IO for a few python tests I missed
* fix typo
* reset Langmuir_multi benchmark
* update Langmuir_multi_nodal benchmark
* update single precision langmuir bench
* update psatd single precision languir one too
* also do ionization_lab
* finally, ionizaiton_boost
* update benchmarks_json/Langmuir_multi_psatd.json
* update benchmarks_json/Langmuir_multi_psatd_current_correction.json
* update benchmarks_json/Langmuir_multi_psatd_momentum_conserving.json
* update benchmarks_json/Langmuir_multi_psatd_nodal.json
* remove the particle E and B from the choices in the docs
* fix offset bug
* also add the Gather subdirectory
* Update Source/WarpX.H
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* add docstring for LowerCornerWithGalilean
* add new source files to CMakeLists.txt
* also need to update the GPU regression tests
* update the name of the output file for this python test
* remove field gather call from FieldDiagnostics
* fix typo in docstring
* init fields to 0
* add docstring to the CopyParticleAttribs constructor
* some explicit amrex::namepace
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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* add a checksum module for regtests
* All capabilities to checksum tests
* update tests to generate a clean benchmark
* call checksum tests from analysis scripts
* Add checksum json benchmarks
* add missing script, better printing and increase tol
* eol
* fix permission, and bump tolerance
* chmod +x checksumAPI.py
* update benchmarks, probably old ones were wrong due to parallelization
* remove unused variable, thanks lgtm
* special handling when the benchmark is 0
* non-zero but very small CFL for 1 step for init tests
* reset erroneous Python benchmarks
* slightly bump tolerance for initial distribution test
* too small dr results in nans
* improve prints, tolerance handling, and fix tests
* typo
* enable tolerance and fields/particles optional comparison to fix tests
* more minor cleaning in space charge initialization tests
* update Python benchmarks for serial runs
* Run Python tests with 1 rank instead of 2
* fields that are zero should not be in reg tests
* Add developer documentation on checksum regression tests
Co-authored-by: Tools <warpx@lbl.gov>
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* Minor updates to Schwinger tests
* Update Examples/Modules/qed/schwinger/analysis_schwinger.py
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Set tests in parallel with 2 threads and 2 procs
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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* Implemented new particle diagnostics in picmi
* Cleaned up picmi adding new particle diagnostics
* In PICMI examples, use name option for diagnostics
* For travis, update ubuntu version to bionic
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* Initial work to add back QED particle generation
* Work in progress: port old QED routines
* Add two distinct CopyFuncs
* modified getMFItInfo and CopyFunc (not working)
* bugfixing & work to add back QED particle creation routines
* bugfixing
* added back quantum photon emission
* bugfixing
* bugfixing
* added back pair generation (still some bugs in photon emission)
* removed unwanted check
* bugfixing
* bugfixing
* bugfixing
* Moved QED folder
* added comments + some refactoring
* added comments
* remove some virtual functions to make lgtm happy
* updated tests
* added PhysicalParticleType
* bugfixing
* added copyright
* improved comments
* improved comments
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* moved inclusion of QEDInternals folder
* moved some inclusion directives between Make files
* moved some inclusion directives between Make files (forgot to add a file)
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* corrected alignment
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* removed some unnecessary amrex::
* add missing comment
* Replaced BL_PROFILE with WARPX_PROFILE
* bugfixing and making some variables const
* removed some moves
* removed some moves
* started to change tau into optical_depth_BW or optical_depth_QSR
* Using initialization policy to initialize optical depth
* bugfixing
* forgot to add a file
* fixed bug
* Revert "fixed bug"
This reverts commit a3fb98d10cc30327635aeaa71451a05ca2229ff4.
* Define doQEDSchwinger function
* Read input parameters for Schwinger process
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Added doQEDEvents to OneStep_sub1
* add a bunch of const
* add _rt suffix
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added path to included files
* Introduced a templated AmIA<something> function using physical_species
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added paths to included headers
* updated documentation
* updated examples
* bugfixing
* bugfixing
* fixing examples
* fixed example
* fixed example
* correct a misprint in error message
* fixed issue related to 1./mass for photons
* Add skeleton of doQEDSchwinger function
* Linked to PICSAR to calculate pair production rate
* Added missing header file
* fix conflicts in QEDPhotonEmission.H
* Written first version of FilterCreateTransformFromFAB.H
* Cleanup some useless comments
* Update Source/Particles/ElementaryProcess/QEDInternals/SchwingerProcessWrapper.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Minor revisions and improvements
* Remove trailing white spaces
* Write filter function
* Remove print
* Some debugging and cleaning
* Write tranform function
* remove transform_dummy
* Added some tests
* Remove EOL whitespaces
* update prepare_file_travis.py
* Should fix error in automated tests
* Make the tests run in parallel
* Put path relative to Source/ in includes
* update include path
* Actually resolve conflicts
* put dVdt and weight_index as members of filter and transform functions
* a bit of debugging on GPU
* Add comments and documentation
* Fix typos
* Add assert for single precision
* Update Docs/source/running_cpp/parameters.rst
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/MultiParticleContainer.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Add profiler and minor modifications
* Fix typo
* Update asserts so that module works with momentum conserving algo
* update assert if particles are created in analysis script
* Apply suggestions from code review
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Add comments to FilterCopyTransform and FilterCreateTransform functions
* Add const and comment
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Update test for new diags and remove AllContainerType
* Update Regression/WarpX-tests.ini
* update test
* update tests
* Split Schwinger test into 4 separate tests
* Change name of analysis script
* update tests
* Combine all analysis scripts into a single one
Co-authored-by: Luca Fedeli <luca.fedeli@cea.fr>
Co-authored-by: Luca Fedeli <luca.fedeli.88@gmail.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Neil <nzaim@iram-fe-003981.extra.cea.fr>
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* fix some tests on Battra
* Fix arguments for tests to pass
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* Create subsection for diags documentation in input parameters list
* Replace old diags with new ones IN DOC ONLY
* eol whitespace
* Check first CI test with new diags, before changing all of them
* use diags in all CI
* oops, had forgotten all examples except Tests/
* Updated picmi interface to use the new diagnostics
* fix bug in how field functors are initialized for diags
* fix bug: should always dump output at the end of simulation
* eol
* update test parameters in ini file
* Further fixes to picmi for new diagnostics
* Updates PICMI input files to use the new diagnostics
* avoid dumping final plotfile twoce
* update test to run with new diags
* fix typo introduced when fixing merge conflicts
* had accidentally removed the max_step here, so the run never ended on TravisCI
* Add Diagnostics.py for picmi with new diagnostics
* Adding m_ for member variables in new diags (#934)
* fixing bug to initialize CellCenterFunctor for Bx
* diag_name renamed to m_diag_name
* some more diag members made m_
* renaming member variable mf_avg to m_mf_output
* fixing m_mf_output to mf_dst in comments
* Python documentation updates (#936)
* Update Python documentation
* Added numpy as a requirement for the Python installation
* Cleaned EOL white space in Python documentation
* Add periodictable to the Python packages required
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Added periodictable to required packages for pure Python version
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Add hostname to LoadBalanceCosts reduced diagnostic (#902)
* Add hostname to reduced diags
EOL
Fix rd loadbalancecosts test
AMREX_USE_MPI
EOL
move macro to source file
Review changes
eol
add GPU ID if running on GPU
eol
Typo in comment
use vectors to get rid of C-style memory management
Fix for test
eol
* Compute number of unique box data fields in analysis script
* analysis script
* Use amrex Tokenize to split string
* Update WarpXUtil.cpp
* Update WarpXUtil.H
* [mini] Add contact us section to documentation (#941)
* add contact us section to doc
* Update Docs/source/contact_us.rst
Co-Authored-By: L. Diana Amorim <LDianaAmorim@lbl.gov>
* Update Docs/source/contact_us.rst
Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
* stop calling the old WritePlotFile functions
* fix new diags, problem with rho and PSATD and particle output variables
* remove more deprecated code for old diags
* Move checkpoint capability to new diagnostics
* error if user asks custom output for checkpoint
* eol
* some more old diags code deleted
* further cleaning
* eol
* further cleaning, make sure that WarpX compiles with USE_OPENPMD
* remove old diags parameters
* use new option to change the plotfile name
* typo
* do not need checkpoint files
* adapt to new option for checkpoint
* removed unread options as they make tests crash
* remove warpx_checkInt from the Python layer
* remove some more python wrappers
* add checkpoint capability with 2 diags in new output
* fix bug in MultiDiagnostics, and (should) fix checkpoint-restart test
* fix restart CI test
* avoid issue when writing the last plotfile twice
* dpgrote's fix for the Python tests
* update doc for diagnostics
* stop requesting ndiags, this is read from the list of diags
* awk to remove ndiags from all example input files
* Removed diagnostics.ndiags from picmi interface
Co-authored-by: Dave Grote <dpgrote@lbl.gov>
Co-authored-by: Dave Grote <grote1@llnl.gov>
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Michael E Rowan <38045958+mrowan137@users.noreply.github.com>
Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
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* always print error and tolerance before ASSERT in CI tests
* eol
* fix typos
* more typo
* typo
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* reduce size of qed_breit_wheeler_opt_depth_evolution
* Update analysis_3d_optical_depth_evolution.py
* Update analysis_3d_optical_depth_evolution.py
* reduce size of Langmuir_multi and delete Langmuir_{x,y,z}
* reduce ppc and filter fields dumped
* finalize cartesian Langmuir tests
* minor changes to python rz multimode
* smaller restart test
* reduce size of TwoParticle_electrostatic
* smaller laser_injection test
* revert changes in QED 3D BW test as it is done in another PR
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Axel Huebl
Neïl Zaim
Remi Lehe
Roelof Groenewald
Phil Miller
Lorenzo Giacomel
Andrew Myers
Revathi Jambunathan
thomas clark
Edoardo Zoni
Weiqun Zhang
David Grote
Luca Fedeli
MaxThevenet
Michael E Rowan
MaxThevenet
