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2021-07-06Add possibility to start and stop moving window (#2027)Gravatar thomas clark 2-2/+2
* Add possibility to start and stop moving window * Update Benchmark laserInjection_2d * Update Source/Diagnostics/BTDiagnostics.cpp Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * modification of the MoveWindow function in the python interface * False to True for move j in python function Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-07-06Input parameter for AMReX MLMG verbosity (#2041)Gravatar Michael Kieburtz 1-2/+5
* Added warpx_solver_verbosity input parameter - This input paramter is for the electrostatic solver to pass into MLMG::setVerbose(int) - Originally this value was hardcoded to 2 * readded accidently deleted line * Handle the default solver_verbosity value on the C++ side * Verbosity parameter now works the same as warpx.self_fields_max_iters - The input parameter for mlmg verbosity is now warpx.self_fields_verbosity - It still has a default value of 2. * fixed missing comma * added missing parameter to function call * Added documentation entry for warpx.self_fields_verbosity * corrected documentation * fixed formatting mistsake
2021-07-02Release 21.07 (#2047)Gravatar Axel Huebl 1-1/+1
* AMReX/PICSAR: 21.07 * WarpX: 21.07
2021-06-24Refactored basestring to str (#2030)Gravatar kzhu-ME 1-6/+6
2021-06-21Add damped to BC_map (#2021)Gravatar David Grote 1-1/+1
2021-06-14callbacks.py: Fix bound method py2 -> py3 syntax (#2012)Gravatar peterscherpelz 1-1/+1
2021-06-07Call function ReadBCParams() during python execution (#1972)Gravatar roelof-groenewald 2-3/+28
* added ReadBCParams() function call to python execution and added a test of the electrostatic solver executing from python * added separate specification of particle boundary conditions in picmi setup and adjusted the inputs for existing tests to follow the new practice * updated input for rz PICMI test and renamed the electrostatic test to follow standard practice * added arguments for particle boundary conditions to Langmuir RZ test * added dictionary to picmi.py to map from picmistandard field boundary condition specifications to that of WarpX * fixes for failing unit tests; added key, pair 'none' to picmi dictionary of field BCs * also using 'none' for upper boundary condition for RZ test Python_Langmuir_rz_multimode
2021-06-01Release 21.06 (#1996)Gravatar Axel Huebl 1-1/+1
* AMReX/PICSAR: 21.06 * WarpX: 21.06
2021-05-11New Input Parameter for Order of Shape Factors (#1934)Gravatar Edoardo Zoni 1-3/+1
* Define New Input Parameter interpolation.shape_factors_order * Use New Input Parameter, Remove Obsolete Ones * Add New Input Parameter to PICMI Interface * Update Docs, Use New Input Parameter in Remaining Input Files * Cleaning * New Name: algo.particle_shape
2021-05-11Feature - Time dependent Dirichlet boundary conditions for electrostatic ↵Gravatar roelof-groenewald 4-0/+40
simulations (#1761) * Update copyright notices * allow specification of boundary potentials at runtime when using Dirichlet boundary conditions in the electrostatic solver (labframe) * added parsing to boundary potentials specified at runtime to allow time dependence through a mathematical expression with t (time) * updated to picmistandard 0.0.14 in order to set the electrostatic solver convergence threshold * update docs * various changes requested during PR review * fixed issue causing old tests to break and added a new test for time varying boundary potentials * possibly a fix for the failed time varying boundary condition test * changed permission on the analysis file for the time varying BCs test * switched to using yt for data analysis since h5py is not available * made changes compatible with PR#1730; changed potential boundary setting routine to use the ParallelFor construct and set all boundaries in a single call * fixed typo in computePhiRZ * updated docs and fixed other minor typos * fixed bug in returning from loop over dimensions when setting boundary potentials rather than continuing * changed to setting potentials on domain boundaries rather than tilebox boundaries and changed picmi.py to accept boundary potentials * now using domain.surroundingNodes() to get the proper boundary cells for the physical domain * fixed typo in variable name specifying z-boundary potential * changed boundary value parameter for Dirichlet BC to boundary.field_lo/hi and changed setPhiBC() to only loop over the grid points when a boundary value has changed * switched specifying potential boundary values though individual inputs of the form boundary.potential_lo/hi_x/y/z and incorporated the new BC formalism through FieldBoundaryType::Periodic and FieldBoundaryType::PEC rather than Geom(0).isPeriodic(idim) * removed incorrect check of whether the potential boundary values are already correct, also had to change the input to test space_charge_initialization_2d to comply with the new boundary condition input parameters and finally changed permissions to analysis_fields.py file for the embedded boundary test since it was failing * remove line from WarpX-tests.ini that was incorrectly added during upstream merge * changed input file for relativistic space charge initialization to new boundary condition specification * fixed outdated comment and updated documentation to reflect that the Dirichlet BCs can also be specified when using the relativistic electrostatic field solver * moved call to get domain boundaries inside the loop over levels * cleaned up the code some by using domain.smallEnd and domain.bigEnd rather than lbound and ubound * added check that a box contains boundary cells before launching a loop over that box cells to set the boundary conditions Co-authored-by: Peter Scherpelz <peter.scherpelz@modernelectron.com>
2021-05-04New release 21.05 (#1931)Gravatar Remi Lehe 1-1/+1
* Deploy new Azure worker, for the embedded boundary test * Correct missing end of line * Update amrex version * Update PICSAR version * Update WarpX version
2021-04-01Release 21.04 (#1865)Gravatar Axel Huebl 1-1/+1
2021-03-11Version: 21.03 (#1772)Gravatar Axel Huebl 1-1/+1
I forgot to bump the version for the last release with our script. Will do better next time.
2021-02-26For picmi, fix MultiSpecies (#1745)Gravatar David Grote 1-2/+8
2021-02-25Add multiple particles source (#1718)Gravatar David Grote 1-8/+10
* Added multiple particles injection source * Added documentation for MultipleParticles
2021-02-18Add "." to libwarpx Aliases (#1720)Gravatar Axel Huebl 2-6/+5
* Add "." to libwarpx Aliases Add a "." to the suffix of the short-hand `libwarpx.<DIM>.<so|dll>` libs. This unifies the suffix with the structure in executables and makes it easier to find a "long" version of the library (not in this PR). Also fixes the suffix naming on Windows to ".dll", since this is a true C/C++ library, not a Python module (aka not a shared library following Python entry points and conventions). * CMake: Add library alias in install Also add the expected library alias in CMake install prefixes.
2021-02-05Input load balance parameters as `algo.load_balance_param` (#1683)Gravatar Michael E Rowan 1-2/+12
* Load balance params now input as algo. * load balance params to algo * Backward compatibility and knapsack_factor_doc * Update Docs/source/running_cpp/parameters.rst * backward_strings * picmi
2021-02-03Updates to match picmi version 0.0.14 (#1672)Gravatar David Grote 2-2/+3
* Updates to match picmi version 0.0.14 Added call to register constants. * Python: Bump Versions Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-01-22Cleaned up field diagnostic in picmi interface (#1649)Gravatar David Grote 1-11/+2
2021-01-14Unify intervals notation (#1485)Gravatar NeilZaim 1-4/+4
* Unify intervals notation * Fix diagnostic intervals with PICMI * Use new syntax in updated Larmor test * Update PICMI to comply with the standard * Update new hybrid test * Update particles_in_PML test input files
2021-01-11Add electrostatic to picmi (#1548)Gravatar David Grote 2-5/+28
* Update ElectrostaticSolver in picmi * Added relativistic option to picmi ElectrostaticSolver * Update PICMI version * Fix electrostatic with picmi Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-12-11PSATD Runtime Control (#1300)Gravatar Axel Huebl 1-3/+2
* Docs: PSATD Runtime Option * Tests: PSATD Runtime Option Add new runtime option to PSATD regression test matrix. * PICMI: PSATD runtime option * Source: PSATD Runtime Option
2020-12-04CMake: objects, shared library, Python (#1519)Gravatar Axel Huebl 2-14/+49
* CMake: libwarpx Reorder CMake builds to collect everything in an object file library, which is then used to link out a shared library and the WarpX executable app. * setup.py: Install up to 3 libs at once Inside CMake build dir: ``` PYWARPX_LIB_DIR=$PWD/lib python3 -m pip wheel ../Python/ ``` * Docs: CMake + Python * CI: Python CMake Package
2020-12-02Fix python wrapper (#1532)Gravatar David Grote 2-61/+71
* Fixes to the Python interface for accessing field and particle data * In Python wrapper, cleaned up how ngrow is handled
2020-12-01setup.py: new release tagGravatar Axel Huebl 1-1/+1
2020-12-01Update and fix to picmi.py (#1539)Gravatar David Grote 1-2/+5
2020-11-17use_filter now controls physical and k-space filtering (#1516)Gravatar David Grote 1-7/+2
* use_filter now controls physical and k-space filtering * Added backward compatibility error if use_kspace_filter is set
2020-11-16Update picmi constants to match the values in PhysConst (#1483)Gravatar David Grote 1-6/+12
* Update picmi constants to match the values in PhysConst * In picmi, use string q_e for charge instead of float with charge_state = +-1 * Updated benchmarks of picmi tests
2020-10-22picmi - minor cleanup, removing unneeded input quantities (#1446)Gravatar David Grote 1-9/+0
2020-10-12picmi - do name mangling on expression variables to ensure their uniqueness ↵Gravatar David Grote 2-30/+89
(#1361) Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-10-08Add laser phase to gaussian profile (#1155)Gravatar Igor Andriyash 1-0/+1
* added the phase argument for the gaussian laser * removed signature * added laser phase to picmi api * added doc string for phi0 * Update parameters.rst typo fix Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-10-05PICMI: read flag for laser continuous injection (#1358)Gravatar Edoardo Zoni 2-2/+4
* PICMI: read flag for laser continuous injection * Simplify assignment of do_continuous_injection * Update PICMI version Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-09-22Initial version of use_damp_fields_in_z_guard option (#1304)Gravatar David Grote 1-0/+3
* Initial version of use_damp_in_z_guard option * Fix typo in WarpX.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Changed use_damp_in_z_guard to use_damp_fields_in_z_guard * Added documentatin for use_damp_fields_in_z_guard * Clean up for use_damp_fields_in_z_guard * Added use_damp_fields_in_z_guard to picmi interface, and moved it to the psatd input group * For RZ spectral, damping of the fields is on by default when not periodic * Updated documentation for use_damp_fields_in_z_guard Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-09-17[Mini]picmi - convert True/False to 1/0 (#1341)Gravatar David Grote 1-0/+2
* picmi - convert True/False to 1/0 * picmi - update picmi input files to use True/False for booleans
2020-09-17picmi - implemented rigid advance species option (#1338)Gravatar David Grote 2-3/+17
2020-09-17Increment minimum PICMI version required (#1343)Gravatar Remi Lehe 1-1/+1
2020-09-15For PICMI, expect length 2 args for 2D solver (#1326)Gravatar David Grote 1-4/+8
* picmi - For 2D, changed arguments to expect length 2 lists * picmi - For 2D, guard_cells should be length 2
2020-09-14picmi: replaced warpx_n[xyz]_guard with grid.guard_cells (#1317)Gravatar David Grote 1-6/+4
2020-09-14PICMI analytic applied fields (#1306)Gravatar David Grote 3-2/+61
* PICMI Added applied fields * PICMI fixed typo in Constants * Change picmistandard version requirement to 0.0.9 * Increment required picmi version Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-09-14picmi: use kspace filter automatically for RZ PSATD (#1318)Gravatar David Grote 1-5/+4
2020-08-31[mini]Bug fix in ParticleListDistribution (#1252)Gravatar David Grote 1-1/+1
This fixes a small bug in the `picmi.ParticleListDistribution` class.
2020-08-24For PICMI, added more arguments for psatd solver (#1259)Gravatar David Grote 1-6/+16
2020-07-27Input: Remove n<something> options (#1217)Gravatar Axel Huebl 3-7/+5
* Input: Remove n<something> options The information in - lasers.nlasers - particles.nspecies - collisions.ncollisions is redundant with their `<...>.names` counter-part and requires users to change info at two locations. We just remove this now since we can query the size of names automatically in the parser. * Examples: remove n<something> Removes: - lasers.nlasers - particles.nspecies - collisions.ncollisions from examples. * QED: Update nspecies * Removed nspecies and nlasers from the Python interface Co-authored-by: Dave Grote <grote1@llnl.gov>
2020-07-27Rename Input to `algo.maxwell_solver` (#1188)Gravatar Axel Huebl 1-1/+1
* Rename Input to `algo.maxwell_solver` Rename the input option `algo.maxwell_fdtd_solver` to `algo.maxwell_solver` and throw a useful error message for users using the old option. This is in preparation to unify FDTD and PSATD input control to reduce mutually exclusive binary variants of WarpX. * MW Solver Name: Update Examples Update all example to use the new algo.maxwell_solver option. * Fix typo in comutation of dt Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-07-27Added k-space filter for RZ spectral solver (#1006)Gravatar David Grote 1-1/+9
* Added k-space filter for RZ spectral solver * Added SpectralBinomialFilter files for RZ spectral solver * Added RZspectral binomial filter to CMakeLists.txt * Update Docs/source/running_cpp/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Docs/source/running_cpp/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralBinomialFilter.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralBinomialFilter.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralFieldDataRZ.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Fixed literals in SpectralBinomialFilter.cpp * For RZ spectral, apply filter to rho old and new * Added SpectralBinomialFilter::InitFilterArray * For SpectralBinomialFilter, combine R and Z into one routine Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * For SpectralBinomialFilter, combine R and Z into one routine, part 2 Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * For SpectralBinomialFilter, combine R and Z into one routine, part 3 Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-07-02PSATD: current correction works only with global FFTs (#1131)Gravatar Edoardo Zoni 1-2/+2
* Clean up implementation of current correction: - abort when current correction runs with psatd.periodic_single_box_fft=0 - rename input parameter from psatd.do_current_correction to psatd.current_correction - add nodal tests in 2D and 3D (using direct current deposition) - change 2D test: use Esirkepov deposition, instead of direct, as in 3D test - add/update relevant checksum benchmarks * Small clean-up
2020-07-02update release tag in all files on the repo (#1138)Gravatar MaxThevenet 1-1/+1
2020-06-26Removed references to particle E and B from Python (#1122)Gravatar David Grote 2-73/+7
2020-06-22Added check of gridding for RZ spectral solver (#1005)Gravatar David Grote 1-0/+2
* Added CheckGriddingForRZSpectral * Bug fix in check gridding for RZ Spectral, fixing handling of refinement ratio * Change numprocs=2 for python reg tests and reset benchmarks (#1075) * changing nprocs to 2 for Python_PlasmaAcceleration test * Resetting benchmark for Python_PlasmaAcceleration test case due to change in nprocs=2 in reg test * resetting benchmarks for Python test-cases except Python_Langmuir due to change in numprocs in WarpX-tests.ini * changing numprocs=2 for Python tests * resetting python reg test benchmarks after updating pywarpx Co-authored-by: Revathi Jambunathan <revanathan@pop-os.localdomain> Co-authored-by: Tools <warpx.lbl.gov> Co-authored-by: Tools <warpx@lbl.gov> * Updates to picmi, mostly related to fields, and add psatd (#1077) * Fixed bad arguments in PICMI_inputs_laser_acceleration.py (#1074) Note that polarization_angle was changed to 0 since that was the value being used because the polarization_argument was bad. * Fix typo for pml_ncell in parameters doc (#1071) * remove #line wp_parser.l because it causes issues with AMReX make system (#1078) * remove amrex namespace from diag functor cpp files and use amrex:: prefic (#1093) * For RZ spectral, updated documentation regarding blocking factor and max grid size Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com> Co-authored-by: Revathi Jambunathan <revanathan@pop-os.localdomain> Co-authored-by: Tools <warpx@lbl.gov> Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: WeiqunZhang <WeiqunZhang@lbl.gov> Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-06-05Updates to picmi, mostly related to fields, and add psatd (#1077)Gravatar David Grote 4-5/+40
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