| Age | Commit message (Collapse) | Author | Files | Lines |
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* Introduce option to update E with/without rho
* Clean up
* Include equations in docs
* Fix EOL whitespaces error
* Small clean-up
* Clean up
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* Clean up implementation of current correction:
- abort when current correction runs with psatd.periodic_single_box_fft=0
- rename input parameter from psatd.do_current_correction to psatd.current_correction
- add nodal tests in 2D and 3D (using direct current deposition)
- change 2D test: use Esirkepov deposition, instead of direct, as in 3D test
- add/update relevant checksum benchmarks
* Small clean-up
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* [skip travis] CMake: Add CMake Scripts
This add CMake scripts for the CMake build system generator.
* CUDA Support Achieved
Fastest compile via:
cmake .. -DENABLE_CUDA=ON -DCUDA_ARCH=6.0
* CMake: openPMD & QED
* CMake: Dimension Support
WarpX_DIMS=2,3,RZ
* CCache & Out-of-Source
Enable CCache when found and prevent in-root builds (in-source okay-ish).
* CMake: CUDA C++ Language Minimum
* Add new Files
* CI: Migrate macOS to CMake
* Fortran: Enable Because Transitive
... for now :)
* CI: Migrate Linux ICC to CMake
* CI: Verbose Make
* CMake: Add Missing PSATD Sources
* CMake: PSATD, Compute, Precision, Clean
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* Added stub for current correction in RZ spectral solver
* Fixed comments in RZ spectral for current correction stub
* Modified automated test for Galilean PSATD (#1033)
Co-authored-by: Olga Shapoval <30510597+oshapoval@users.noreply.github.com>
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* Start implementing PSATD push without rho.
TODO: 1) fix unit test pml_x_psatd;
2) try new PSATD push in PML;
3) avoid intro of new derived class?
* Correct PSATD push to fix PML test.
* Few improvements on new PSATD push:
- new class name is 'PsatdAlgorithmMixed' (both rho and J are used);
- new algorithm parameter to choose between available implementations:
parameter name is 'psatd_push', possible values are 'standard' for
old implementation using rho via Gauss law and continuity equation
and 'mixed' for new implementation using rho via Gauss law and J for
all remaining terms.
* Fix style error (tabs vs four white spaces).
* Improve comments for available PSATD algorithms.
* Correct few typos in latest comments.
* Implement first current correction:
- new member function 'CurrentCorrection' in class SpectralSolver;
- correction applied only without subcycling (in function 'OneStep_nosub');
- TODO: add correction when subcycling is used (in function 'OneStep_sub1');
- back to old implementation of PSATD push of E and B (class 'PsatdAlgorithmMixed' removed);
- TODO: PML unit test 'pml_x_psatd' does not pass.
* Small cleanup:
- remove residual option for choice of PSATD push algorithm (only one choice now);
- improve comments.
* Implement div(E) diagnostics for spectral case.
* split travis tests in bigger matrix
* split more TravisCI tests, add electrostatic, use defaults values
* typo
* Move computation of div(E) to base class SpectralBaseAlgorithm.
* need to split psatd too
* consistent variable names and use function to avoid duplication
* fix typo for qed tests
* typo
* also need to update run_tests.sg
* Update copyright tags.
* change matrix
* Add test of div(E) vs rho/epsilon_0 in PML test.
* Small clean-up.
* Small clean-up
* Remove option for current correction from input files of two new tests (not used)
* Small clean-up: remove unnecessary references
* More clean-up (minimize style changes to keep PR simple).
* Add specific 2D/3D tests for current correction:
- 'Langmuir_multi_2d_psatd_cc': same input file as 'Langmuir_multi_2d_psatd',
except for current correction and output of divE;
- 'Langmuir_multi_psatd_cc': same input file (3D) as 'Langmuir_multi_psatd',
except for current correction and output of divE;
- add corresponding Python scripts for analysis: same as previous ones,
except for check on L-infinity spatial norm of rho/epsilon_0 vs div(E);
- revert changes on old tests: do not use current correction in old tests
(benchmarks on Battra do not need to be updated).
* Improve comments.
* Start implementation of new averaging with staggering:
- face-to-cell-center and edge-to-cell-center replaced so far;
- TODO: node-to-cell-center and 1D behavior (AMREX_SPACEDIM=1).
* Remove unrelated style changes (cleaner PR).
* Avoid duplication of input files and analysis scripts for new tests
* Improve comments for Doxygen documentation.
* Improve comments for Doxygen documentation.
* Small clean-up
* first implementation of Diags base classes
* Small clean-up
* Small clean-up
* Fix erroneous non-ASCII character
* Small clean-up
* Auxiliary function for current correction in class WarpX to keep OneStep_nosub clean
* Remove unrelated style changes (cleaner PR)
* Improve comments
* Instrument virtual function 'CurrentCorrection'
* Trying to fix build error detected by LGTM analysis only
* add example, temporarily
* Continue implementation of new averaging with staggering:
- new function takes reference to single MultiFab (no vector);
- TODO: node-to-cell-center still in progress.
* Fix small bug and clean up
* Fix bug in loop over n=0,...,ncomp-1 and clean up
* add more functions
* Add Doxygen documentation and clean up
* Small clean-up in Doxygen documentation
* Compile in single precision: add _rt suffix to avoid unnecessary conversions
* Avoid accessing staggering index directly from IntVect in innermost loops
* Implement periodic-single box option for spectral
* Fix out-of-bound in the periodic, single-box case
* Replace do-while loop with for loop (default ncomp=1)
* Remove temporary pointer and pass reference to MultiFab (instead of MultiFab*)
* Replace AMREX_LAUNCH_HOST_DEVICE_LAMBDA with ParallelFor
* cleaning and initialize output mf
* use general average routine
* move flush in new class, and implemented the Plotfile derived class
* add comments
* eol
* free memory in destructor
* typo
* typo
* no need to clear MF pointers there
* though shalt not break existing tests
* FlushRaw doesnt have to be virtual for now
* The importance of being constant
* Capability to select fields in output files
* EOL
* revert to old inputs
* const in right place
* avoid brace initializer there
* oops, fix logic error in is_in
* Use old name for output image of new 2D test
* user can choose flush interval, same behavior as plot_int
* Small clean-up in Doxygen documentation
* Add option to plot raw fields
* eol
* replace ter flush with dump to avoid confusion
* add options
* Diagnostics stores a vector of functors to compute diags on the fly
* eol
* Field gather from diags to sync particle quantities
* New diagnostics handle RZ with same behavior as old ones
* cleaning and doc
* const ref for string
* smarter for loop from Axel and typo fix from Reva
* Functors to compute some fields
* simplify code following Dave's comments
* Create subfolders and add more output options (divE etc.)
* eol
* Add documentation for periodic_single_box_fft
* For periodic, single-box, apply current correction after guard cell exchange
* rename mode_avg to convertRZmodes2cartesian
* Update CellCenterFunctor.H
* fill varnames and vector of functors at the same time
* output rho_new, not rho_old
* WarpX instance not needed here
* add const
* little bit more of reorganization
* Travis CI: force 2 MPI processes only for numprocs > 2
* Use special FFT (PR #834) and new diagnostics (PR #844) in new tests
* Improve Doxygen documentation
* Move option do_current_correction from warpx to psatd
* Fix path to output files for tests using new diagnostics
* Fix additional paths to output files for new diagnostics
* Add input paramter do_current_correction to documentation
* Fix test Langmuir_multi_psatd_hybrid: do not plot divE
* Remove input parameter amr.plot_int in tests using new diagnostics
* Trigger failing source/style checks on Travis CI
* Fix build error due to public include
* Add missing const keywords
* Change test names and corresponding analysis scripts
* Improve Python script for analysis
* Do not rename output files in old CI tests (without current correction)
* Fix output file name prefix for some tests
* Trigger Travis CI build after AMReX bug fix
* Void commit: trigger Travis CI build
* Fix some tests failing due to recent changes in master
* Use new diagnostics for particle output correctly
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Print tolerance and error in Python analysis
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Print tolerance and error in Python analysis
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Improve documentation
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Fix EOL white spaces
* Fix name of particle output variables
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* CI: macOS Single Precision
Add another compile with single precision on AppleClang.
* AMReX' complex for everything
This is nice and compliant and works on all platforms.
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* For diagnostics, added RZ modes of scalars, allowed different centerings
* For RZ, generalized the centering of the inverse volume scaling of J and rho
* Fixed spacing in ConstructTotalRZScalarField
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Added Python wrapper of charge density arrays
* Add assert ensuring that Jr is never node-centered
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Small fixes to Python to better handle particle weights
* Implementation of the RZ spectral solver
* Removed k-space filtering code
* Removed more k-space filter code from RZ spectral solver
* For RZ spectral, added _rt for literals and cleaned up namespace use
* In RZ spectral solver, cleaned up some member names
* Update Docs/source/building/rzgeometry.rst
Small fix for clarity.
Co-Authored-By: Remi Lehe <remi.lehe@normalesup.org>
* Update Source/Evolve/WarpXEvolve.cpp
Fix macro indentation
Co-Authored-By: Remi Lehe <remi.lehe@normalesup.org>
* Update Source/Evolve/WarpXEvolve.cpp
Fix more macro indentation
Co-Authored-By: Remi Lehe <remi.lehe@normalesup.org>
* Update Source/Evolve/WarpXEvolve.cpp
Fix another macro indentation
Co-Authored-By: Remi Lehe <remi.lehe@normalesup.org>
* New diagnostics support RZ (#836)
* Start implementation of new averaging with staggering:
- face-to-cell-center and edge-to-cell-center replaced so far;
- TODO: node-to-cell-center and 1D behavior (AMREX_SPACEDIM=1).
* first implementation of Diags base classes
* add example, temporarily
* Continue implementation of new averaging with staggering:
- new function takes reference to single MultiFab (no vector);
- TODO: node-to-cell-center still in progress.
* Fix small bug and clean up
* Fix bug in loop over n=0,...,ncomp-1 and clean up
* add more functions
* Add Doxygen documentation and clean up
* Small clean-up in Doxygen documentation
* Compile in single precision: add _rt suffix to avoid unnecessary conversions
* Avoid accessing staggering index directly from IntVect in innermost loops
* Replace do-while loop with for loop (default ncomp=1)
* Remove temporary pointer and pass reference to MultiFab (instead of MultiFab*)
* Replace AMREX_LAUNCH_HOST_DEVICE_LAMBDA with ParallelFor
* cleaning and initialize output mf
* use general average routine
* move flush in new class, and implemented the Plotfile derived class
* add comments
* eol
* free memory in destructor
* typo
* typo
* no need to clear MF pointers there
* though shalt not break existing tests
* FlushRaw doesnt have to be virtual for now
* The importance of being constant
* Capability to select fields in output files
* EOL
* revert to old inputs
* const in right place
* avoid brace initializer there
* oops, fix logic error in is_in
* user can choose flush interval, same behavior as plot_int
* Add option to plot raw fields
* eol
* replace ter flush with dump to avoid confusion
* add options
* Diagnostics stores a vector of functors to compute diags on the fly
* eol
* Field gather from diags to sync particle quantities
* New diagnostics handle RZ with same behavior as old ones
* cleaning and doc
* const ref for string
* smarter for loop from Axel and typo fix from Reva
* simplify code following Dave's comments
* rename mode_avg to convertRZmodes2cartesian
* Update CellCenterFunctor.H
* fill varnames and vector of functors at the same time
* WarpX instance not needed here
* add const
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
* Add load balance options documentation (#842)
* Add load balance options documentation
* Add load balance options documentations
* EOL
* Replace tilebox by growntilebox (#849)
* Updated Profiling information in running_cpp (#776)
* Fixed link that was pointing to 404 error page
* Added motivation for profiling and TINYPROFILERS explanation
* Moved section on NERSC profiling to developers Docs
* Update Docs/source/running_cpp/profiling.rst
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update tiny profilers suggestion Docs/source/running_cpp/profiling.rst
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Fix typo Docs/source/running_cpp/profiling.rst
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Add a few additional diags (divE etc.) (#844)
* Start implementation of new averaging with staggering:
- face-to-cell-center and edge-to-cell-center replaced so far;
- TODO: node-to-cell-center and 1D behavior (AMREX_SPACEDIM=1).
* first implementation of Diags base classes
* add example, temporarily
* Continue implementation of new averaging with staggering:
- new function takes reference to single MultiFab (no vector);
- TODO: node-to-cell-center still in progress.
* Fix small bug and clean up
* Fix bug in loop over n=0,...,ncomp-1 and clean up
* add more functions
* Add Doxygen documentation and clean up
* Small clean-up in Doxygen documentation
* Compile in single precision: add _rt suffix to avoid unnecessary conversions
* Avoid accessing staggering index directly from IntVect in innermost loops
* Replace do-while loop with for loop (default ncomp=1)
* Remove temporary pointer and pass reference to MultiFab (instead of MultiFab*)
* Replace AMREX_LAUNCH_HOST_DEVICE_LAMBDA with ParallelFor
* cleaning and initialize output mf
* use general average routine
* move flush in new class, and implemented the Plotfile derived class
* add comments
* eol
* free memory in destructor
* typo
* typo
* no need to clear MF pointers there
* though shalt not break existing tests
* FlushRaw doesnt have to be virtual for now
* The importance of being constant
* Capability to select fields in output files
* EOL
* revert to old inputs
* const in right place
* avoid brace initializer there
* oops, fix logic error in is_in
* user can choose flush interval, same behavior as plot_int
* Add option to plot raw fields
* eol
* replace ter flush with dump to avoid confusion
* add options
* Diagnostics stores a vector of functors to compute diags on the fly
* eol
* Field gather from diags to sync particle quantities
* New diagnostics handle RZ with same behavior as old ones
* cleaning and doc
* const ref for string
* smarter for loop from Axel and typo fix from Reva
* Functors to compute some fields
* simplify code following Dave's comments
* Create subfolders and add more output options (divE etc.)
* eol
* rename mode_avg to convertRZmodes2cartesian
* Update CellCenterFunctor.H
* fill varnames and vector of functors at the same time
* output rho_new, not rho_old
* WarpX instance not needed here
* add const
* little bit more of reorganization
* Apply suggestions from code review
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* add a bunch of const
* make derived classes final
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Add Initial Distribution Test (#735)
* Add Histogram
* Add normalization
* Add doc
* Minor
* Minor
* Fix a bug
* Add gaussian distribution test
* Fix alert and change amr.plot_int
* Add maxwell-boltzmann distribution test
* Add maxwell-boltzmann distribution test
* Add maxwell-boltzmann distribution test
* Add maxwell-juttner
* Minor
* Typo
* Minor
* Minor
* Add const
* Apply suggestions from code review
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Modify based on suggestions.
* Add histogram name
* Add bin values
* Don't add histogram name
* Modify read_raw_data.py
* Add doc
* Change ux,uy,uz units
* Change ux,uy,uz units
* Change if format
* Save some variables
* Change more
* Minor
* Fix a bug on GPU
* Fix a bug on GPU
* Add wrong species name abort
* Minor doc
* Change #include format
* Apply suggestions from code review
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Add const
* Change to member variables
* revert
* Change units based on changes of PR#727
* merge
* Add Gaussian position distribution test
* Minor
* Change based on suggestions
* Use read_raw_data.py
* Minor
* Change to no normalization
* Add more in doc
* doc
* doc
* Use relative error
* Don't divide by bin_size
* Change based on suggestions
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Tests: Fix Bool Switch Typo OMP (#854)
useOMP is 0 (False) or 1 (True)
* Costs vector of (pointer to) vector (#829)
* [WIP] costs mf --> costs vector
* [WIP] costs vector
* [WIP] vector costs
* formatting
* makefile
* [WIP] costs vector
* [WIP] *= costs
* wts do not need to divide by num cells
* Tiling safety on CPU
* Add tests
* EOL
* Remove unneeded input
* Update Source/WarpX.H costs documentation
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update timers with times only if user Timers update
* warpx.-->WarpX::
* warpx.-->WarpX::
* warpx.-->WarpX::
* warpx.-->WarpX::
* warpx.-->WarpX::
* add dev synch
* Update Regression/WarpX-tests.ini
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Delete inputs_loadbalance_costs_heuristic
* Update and rename inputs_loadbalancecosts_timers to inputs_loadbalancecosts
* Update WarpX-tests.ini
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* [mini-PR] Read species distribution from OPMD file (#847)
* Added <species>.profile=external_file and .profile_file
* Added description of input parameters to Docs
* Changed from profile to injection option for external file
* Fix typo in amrex abort message (due to copy paste)
* Added the OpenPMD use amrex abort message
* Minor fix - not sure how to remove EOL issue
* Tried to add AddExternalFileBeam functon to PhysicalParticleContainer
* Trued to fix EOL white space issue
* Added read/print species name from OPMD file
* Update Source/Initialization/PlasmaInjector.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* No need to include openPMD header yet
* Fix EOL according to @ax3l's recommendation in #845
* Remove commented out AbortMessage
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Removed commented out part initialization (used only in branch for next PR)
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Added warning that this is WIP
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Changed function name to AddPlasmaFromFile
* Removed AMReX warning from loop
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Ignore python build/dist and egg folders (#850)
* Travis CI: set max numprocs=2 and do not overwrite (#860)
* [mini-PR] Fix bug in Breit-Wheeler engine (#852)
* fixed bug in BW engine
* fixed bug
* fixed bug
* fixed bug
* fixed bug
* fixed bug
* eliminate useless variable
* updated test
* updated inputfile
* Updated tests
* increase tolerance from .04 to .07 in QED 3D BW test
* do plot pos_bw and ele_bw
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Documentation update - towards full SI (#301)
* Added blank line after list. Changed characters in link to Q. H. Liu paper so hyoerlink works with sphinx-build 2.1.2.
* Added line cut unintentionally.
* Removed line added unintentionally.
* Same as before.
* Same as before, but hopefully successfully
* Same as before, but hopefully successfully
* Minor changes to description of PWFA example run
* Revert "Minor changes to description of PWFA example run"
This reverts commit a4d7fa969c906959b018efe683a3e585cbd741f9.
* Revert "Profiler wrapper to allow for cudaDeviceSynchronize (#738)"
This reverts commit bbefc3dad687f4370afd5bc85386d983201cb321.
* Revert "Revert "Minor changes to description of PWFA example run""
This reverts commit 965982d35361ff54d0ad10101ffc31605117e5ac.
* Revert "Minor changes to description of PWFA example run"
This reverts commit a4d7fa969c906959b018efe683a3e585cbd741f9.
* I am making a huge mess with merging
* Minor changes to description of PWFA example run
* Added explanation PWFA simulation section
* Re-structuring. Adding sections for each choice.
* Minor fix to note
* Minor changes to text
* Time step description + fixed line length
* Added FDTD and CKC selection
* Added max time step calculations
* Trying to fix EOL issue
* Added mesh refinement and moving window
* Fixed minor issues
* Fix EOL issues again
* Fixed typo - auxiliary
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Diana Amorim <diana@henrivincenti.dhcp.lbl.gov>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Remove compiler warnings (#843)
* Fix compiler warnings with DIM=2
* Fix compiler warnings with USE_RZ=TRUE
* Fix compiler warnings with USE_PSATD=TRUE and DIM=2
* Fix compiler warnings with USE_PSATD=TRUE and DIM=3
* Fix bug: discard only return value when calling DefineAndReturnParticleTile
* Remove unused variables not triggering warnings
* [mini-PR] Fix energy calculation for photons in reduced diagnostics (#861)
* fix energy calculation for photons
* fixed typo and mada calculation clearer
* added photon particles in reduced diags test
* Update Source/Diagnostics/ReducedDiags/ParticleEnergy.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Diagnostics/ReducedDiags/ParticleEnergy.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Port rigid injection to the gpu (#862)
* port rigid injection to the gpu
* eol
* Apply suggestions from code review
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* define csqi
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Added blocking factor to 2d and RZ geometries (#864)
* doc: fix formatting for ascent yaml examples (#865)
* [mini-PR] Clarifying ionizable particle charge (#863)
* Added documentation note on ionization particle charge
* Added correct charge of ion to be ionized
* Corrected multiplication symbol
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Testing doxygen issue
* Charge correction only to ionizable species
* Trying to fix doxygen url fetch issue
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* In HankelTransform, added explicit matrix multiply for GPU
* In RZ spectral solver, update setval to be on device
* Removed CEXE_headers from FieldSolver/SpectralSolver/Make.package
* In HankelTransform, added check of the Bessel root finder
* Updated includes to RZ spectral solver
* Added comments on how Hankel transform matrix is calculated
* Added more comments to Hankel transform calculation
* For RZ spectral solver, cleaned up naming and add subdirectory for Hankel transform files
* Cleaned up code in PsatdAlgorithmRZ.cpp
* Updated comment for fields in SpectralFieldDataRZ.cpp
* Changed HankelTransformer to MultiSpectralHankelTransformer
* Updates comments in RZ spectral solver
* Removed code for k-space filtering that will be added in a later PR
* For RZ spectral solver, passed lev in
* Fixed comment in SpectralFieldDataRZ.cpp
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: Michael E Rowan <38045958+mrowan137@users.noreply.github.com>
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Yinjian Zhao <yinjianzhao@lbl.gov>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
Co-authored-by: Luca Fedeli <luca.fedeli@cea.fr>
Co-authored-by: Diana Amorim <diana@henrivincenti.dhcp.lbl.gov>
Co-authored-by: Andrew Myers <atmyers@lbl.gov>
Co-authored-by: Cyrus Harrison <cyrush@llnl.gov>
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* Includes: Only From `Source/`
Avoid adding all directories to include paths:
- automatically structure includes more clearly, e.g. a util include
with a short name is clearly seen as such
- should have some small positive impact on compile time, since the
compiler has to search less directories for an include file
* Includes: Fix Non-Local Paths
Add missing prefix relative to `Source/` for WarpX-local includes.
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Remove the listing of all header-files from the Make-buildsystem.
Listing public header files here tells the AMReX Makefile build
system to install those in an install step after build. WarpX is
currently not building a public library which can be consumed by
users for their projects and only an executable.
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* Fix compiler warnings with DIM=2
* Fix compiler warnings with USE_RZ=TRUE
* Fix compiler warnings with USE_PSATD=TRUE and DIM=2
* Fix compiler warnings with USE_PSATD=TRUE and DIM=3
* Fix bug: discard only return value when calling DefineAndReturnParticleTile
* Remove unused variables not triggering warnings
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* fix compilation for single precision PSATD with USE_GPU
* compiles and tested on CPU also
* add sentence to doc: FFTW needs to be compiled with single precision option
* add test, better pre-proc directives indent, clearer ifdef
* use using whenever possible
* indent
* fix TravisCI matrix, and improve matrix test
* need to compile with same precision for fields and particles
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* Implement div(E) diagnostics for spectral case.
* split travis tests in bigger matrix
* split more TravisCI tests, add electrostatic, use defaults values
* typo
* Move computation of div(E) to base class SpectralBaseAlgorithm.
* need to split psatd too
* consistent variable names and use function to avoid duplication
* fix typo for qed tests
* typo
* also need to update run_tests.sg
* Update copyright tags.
* change matrix
* Add test of div(E) vs rho/epsilon_0 in PML test.
* SpectralFieldIndex: reuse memory slot for Bx when computing divE.
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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- Use `""` for WarpX-local includes
- Order: WarpX `""`, AMReX `<>`, other third party includes `<>`
- Add dir prefixes for WarpX
Add order to includes by including from `Source/` onward and keeping
directory prefixes of non-local includes for clarity.
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* Read Galilean velocity
* Prepare structures for Galilean solver
* Started implementing Galilean equations
* Analytical limits for X1, X2, X3, X4 coefficients added
* Slight changes added
* Added Galilean position pusher
* Scale galilean velocity
* Remove unneeded Abort
* Fix Galilean pusher
* Allocate Theta2 array
* Fix definition of coefficients
* Increase guard cells for Galilean
* Add guard cell in particle exchange
* Type corrected
* v_gal added to warpx_current_deposition
* v_gal added to WarpXParticleContainer.H
* Bug fixed - update particle x-position over one time step
* Fix issues with merge from dev
* Preparation for merging dev into galilean.
* Adding galilean shift
* Implemented galilean shift
* Changed method's name from GalileanShift to ShiftGalileanBoundary
* Added doxygen string for ShiftGalileanBoundary
* Removed never used method LowerCornerWithCentering
* Removed temporary comments
* Removed dt as a variable from DepositCharge method and its dependencies
* Converted tab to spaces
* Removed EOL white space
* Add documentation and automated tests
* Fix compilation error
* Add automated test
* Update automated test
* Removed temporary used galilean shift
* Removed temporary used particle's push for Galilean PSATD
* Removed unused statement
* Remove EOL white space.
* Added zero shift for LowerCorner in RZ geometry
* Minor changes to Galilean implementation
* Modifications for GPU
* Fix typo
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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Manually fix tabs to four spaces and alignments for consistent
prepresentation of source code over all machines.
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End-of-line (EOL) whitespaces are verbose and increase diffs and
merge conflicts over time.
Cleaned them up for the `Source/`, `Examples/` and `Tools/` directory
with the following bash one-liner:
```bash
find . -type f -not -path './.git*' \
-exec sed -i 's/[[:blank:]]*$//' {} \;
```
Committed as generic user so git does not credit the many lines
to me:
```bash
GIT_AUTHOR_NAME="Tools" GIT_AUTHOR_EMAIL="warpx@lbl.gov" \
git commit
```
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Edoardo Zoni
Axel Huebl
David Grote
Michael E Rowan
MaxThevenet
Olga Shapoval
Tools
Remi Lehe
Revathi Jambunathan
Revathi Jambunathan
