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2020-11-13Simplify Python Callback (#1511)Gravatar Axel Huebl 2-7/+0
There is no need to modify the evolve routines depending on the python build. By default, the callbacks are stored as shared globals, which are validly initialized to nothing. This simplifies the binary variants of WarpX.
2020-10-26PSATD: only deposit charge if needed (#1428)Gravatar NeilZaim 1-2/+5
* PSATD: only deposit charge if needed * Update Source/FieldSolver/WarpXPushFieldsEM.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-10-26Explicit choice of `max_iters` for MLMG solver (#1471)Gravatar Igor Andriyash 1-2/+4
* added an option to set explicitely `max_iters` for MLMG solver * fix EOL white spaces * fix EOL white spaces 2
2020-10-19RZ PSATD, in forward transforms, initialize the copies to zero if needed (#1445)Gravatar David Grote 1-0/+11
2020-10-19Replace wherever possible '.reset(new' with '= make_unique' (#1429)Gravatar Luca Fedeli 5-24/+31
* replace wherever possible .reset(new with = make_unique * fixed bug * fixed bug * revert WarpXOpenPMD.cpp to the original version * removed another .reset(new
2020-10-07RZ + single precision fix (#1417)Gravatar Michael E Rowan 1-5/+18
* RZ_SP fix * RZ SP fix * Fix cufft for single precision RZ. Co-authored-by: Weiqun Zhang <weiqunzhang@lbl.gov>
2020-10-07rocFFT support (#1410)Gravatar Weiqun Zhang 6-23/+250
* rocFFT support * rocfft in 2d rz PSATD solver
2020-10-07Do not store first Fornberg coefficient (#1419)Gravatar Edoardo Zoni 2-31/+36
2020-10-02Fix some warnings for PSATD builds (#1401)Gravatar Edoardo Zoni 10-49/+31
* Fix warnings for 2D/3D PSATD builds * Fix warnings for RZ PSATD builds * Update FIXME comment: no known bug * Fix remaining warning for RZ PSATD builds
2020-10-01RZ spectral: add default value of i_comp in scalar transforms (#1404)Gravatar David Grote 1-2/+2
2020-09-30Use fewer guard cells for deposition (#1368)Gravatar Edoardo Zoni 1-2/+3
* Use fewer guard cells for deposition * Update some CI benchmarks * Revert "Update some CI benchmarks" This reverts commit 2f40062557d75e3f6b2d3ba284332b8a92a0d404. * Check if shapes and guard cells are compatible only for rho * Do not allocate one extra guard cell for J * Add more relaxed check on shapes and guard cells for J
2020-09-24RZ spectral current correction and Galilean (#1216)Gravatar David Grote 11-37/+574
* Added stub for current correction in RZ spectral solver * Fixed comments in RZ spectral for current correction stub * Modified automated test for Galilean PSATD (#1033) * Impemented current correction in RZ spectral * Implementation Galilean version of RZ spectral solver * For RZ spectral, do forward and backward transform with current correction * Big fix in DivEFunctor.cpp for RZ spectral * Added RZ rho diagnostic for saving the modes * Implemented fft_periodic_single_box for RZ spectral * Moved routines from SpectralSolverRZ.H to .cpp * Added hook for VayDeposition in GalileanPsatdAlgorithmRZ * Bug fix in DivEFunctor * Fixes and cleanup for GalileanPsatdAlgorithmRZ * Fix line spacing in SpectralSolverRZ.H * Fix factor 1/2 in update of Ep_m * Fix factor 1/2 in update of Em_m * Fix sign error in current correction in GalileanPsatdAlgorithmRZ.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Add Langmuir RZ PSATD test with current correction * Add Galilean tests with/without current correction * For RZ psatd, simplified copy for forward transform * Added GalileanPsatdAlgorithmRZ.cpp to CMakeLists * Minor cleanup in RZ spectral solver * In GalileanPsatdAlgorithmRZ.cpp use member initialization for m_v_galilean Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Added some _rt to GalileanPsatdAlgorithmRZ.cpp Co-authored-by: Olga Shapoval <30510597+oshapoval@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
2020-09-23[mini-PR] Fix a couple of warnings (#1372)Gravatar Luca Fedeli 1-4/+4
* removed extra ; * fixed unused variable * changed variable name to avoid shadowing * fixed bug
2020-09-23Implemented fft_periodic_single_box for RZ spectral (#1301)Gravatar Remi Lehe 6-97/+97
* Implemented fft_periodic_single_box for RZ spectral For RZ psatd, simplified copy for forward transform * Apply review's suggestions and clean up * Add few comments, fix warnings, apply style conventions Co-authored-by: Dave Grote <dpgrote@lbl.gov> Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
2020-09-22Initial version of use_damp_fields_in_z_guard option (#1304)Gravatar David Grote 1-0/+88
* Initial version of use_damp_in_z_guard option * Fix typo in WarpX.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Changed use_damp_in_z_guard to use_damp_fields_in_z_guard * Added documentatin for use_damp_fields_in_z_guard * Clean up for use_damp_fields_in_z_guard * Added use_damp_fields_in_z_guard to picmi interface, and moved it to the psatd input group * For RZ spectral, damping of the fields is on by default when not periodic * Updated documentation for use_damp_fields_in_z_guard Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-09-18fix warnings in RZ (#1349)Gravatar Luca Fedeli 10-16/+38
2020-09-17Fix few compilation warnings (shift) (#1310)Gravatar Luca Fedeli 1-1/+0
* fix << declaration of galilean_shift shadows a member of WarpX >> * fix << unused mu_stag >> * fix << unused uxp, uyp, uzp >> * renamed galilean_shift (member variable of WarpX class) into m_galilean_shift * renamed v_galilean to m_v_galilean when appropriate * fixed bug introduced in latest commit * fix <<comparison of integer expressions of different signedness>> * Update Source/FieldSolver/FiniteDifferenceSolver/MacroscopicEvolveE.cpp Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2020-09-14Remove The_Managed_Arena (#1313)Gravatar WeiqunZhang 2-6/+6
* Remove the base class of InjectorPoisition, InjectorDensity and InjectorMomentum so that they no longer live in managed memory. * Have both host and device copies of Injector*. * Modify Parser classes so that they can work without unified memory. Add HostDeviceParser that is non-owning and therefore suitable for being value captured by device lambda.
2020-09-14Clean up profiling labels (#1320)Gravatar Edoardo Zoni 1-2/+2
2020-09-10SpectralSolverRZ.H: Move Implementations to Source File (#1290)Gravatar Remi Lehe 2-38/+74
* Moved routines from SpectralSolverRZ.H to .cpp * Correct missing Vay deposition routine * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Dave Grote <dpgrote@lbl.gov> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-09-09Variation of macroscopic properties for E-update (#1016)Gravatar Revathi Jambunathan 8-85/+461
* Adding macro-E Push and new file * Add macroEvolveE, call it, and include algo selection in utils * fix eol * Fixing bug in macroE for sigma method 1 * changing MacroEvolveE to MacroscopicEvolveE * add class for macroscopicproperties and an object in WarpX class * fix eol * adding templated ckc call with comment that EvolveE is same for yee and ckc * add header file pointing to ckc algorithm * adding obejct m_macroscopic_properties to access sigma,eps,mu * some cleaning * Adding comments * adding documentation * spelling wandroff to wendroff * fixing eol * eol * const in the right place. Thanks bot! * profiler for macroscopic evolveE * MultiFab macroproperties with constant init, templated macroEvolveE, * call macroparameter init * eol fix * add parser for macroscopic properties * fix eol * adding input file * __device__ lambda cannot be private in class * fix grown tilebox declaration for init data * [skip ci] some more merge conflicts * some comments * removing redundant calls to Macroscopic EvolveE * [skip ci] fix growntilebox for initializing macro mf * clean and fix BackwardEuler call for ckc * commenting out old alpha and beta implementations * temporarily commiting local changes with calls in Interp. * fixing a typo * clean and add documentation * remove the test input file * fix typo * eol fix * Update Docs/source/running_cpp/parameters.rst Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov> * PR suggestions * Update Source/FieldSolver/WarpXPushFieldsEM.cpp Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov> * removing unnecessary includes * adding 2D initialization for stag arrays * removing init_style input parameter for material properties * eol fix * Adding dE/dt eq curl of (B/mu) * PhysConst ep0 and mu0 * Add functor for field access for macro and vacuum (B/mu) * fix eol * Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/FieldAccessorFunctors.H Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Apply suggestions from code review Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianCKCAlgorithm.H Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Apply suggestions from code review Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * fixing compilation errors and removing Gpu ManagedVector Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov> Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-09-03Fix some warnings in RZ spectral solver (#1286)Gravatar Remi Lehe 2-13/+13
* Fix some warnings in RZ spectral solver * enum: re-add ; Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2020-09-03Remove ManagedVector from finite-difference solver (#1269)Gravatar WeiqunZhang 6-21/+51
2020-09-03fix implicit capture of this in lambda function (#1282)Gravatar Luca Fedeli 1-1/+2
2020-09-01Remove ManagedVector from spectral solver (#1270)Gravatar WeiqunZhang 8-104/+131
2020-09-01 Fix 🩹(almost) all warnings ⚠️ with default configuration in 2D ↵Gravatar Luca Fedeli 1-0/+3
(DIM=2, openMP+MPI, double precision, no advanced solvers, no QED, native output) (#1264) Depends on #1263
2020-08-31Fix 🩹 (almost) all warnings ⚠️ with default configuration (DIM=3, ↵Gravatar Luca Fedeli 2-1/+6
openMP+MPI, double precision, no advanced solvers, no QED, native output) (#1263) This PR should fix almost all the compilation warnings in the default configuration (DIM=3, openMP+MPI, double precision, no advanced solvers, no QED, native output...). Or at least it does that on my system (my compiler is `g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0` ). I have just two residual warnings: ### 1 ``` [ 89%] Building CXX object CMakeFiles/WarpX.dir/Source/Parser/wp_parser.lex.cpp.o wp_parser.lex.c:1356:17: warning: ‘void yyunput(int, char*)’ defined but not used [-Wunused-function] ``` I don't know if `yyunput(int, char*)` is there for a reason, even if it is not used. So I didn't do anything. ### 2 ``` [ 96%] Building CXX object CMakeFiles/WarpX.dir/Source/Utils/CoarsenIO.cpp.o /home/luca/Projects/warpx_dir/WarpX/Source/Particles/WarpXParticleContainer.cpp: In member function ‘void WarpXParticleContainer::AddNParticles(int, int, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, int, const ParticleReal*, int, int)’: /home/luca/Projects/warpx_dir/WarpX/Source/Particles/WarpXParticleContainer.cpp:102:44: warning: unused parameter ‘nattr’ [-Wunused-parameter] 102 | int nattr, const ParticleReal* attr, int uniqueparticles, int id) ``` The first line of `AddNParticles` is `BL_ASSERT(nattr == 1); //! @fixme nattr is unused below: false sense of safety` . So I thought that there might be something to fix here and I didn't do anything.
2020-08-31Add copyright headers when missing (#1262)Gravatar MaxThevenet 3-0/+21
This PR adds a copyright header when missing in some files.
2020-08-24Fix some warnings (#1239)Gravatar Luca Fedeli 12-36/+76
This PR fixes the source of several compilation warnings. Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2020-08-17Bug fix for RZ PSATD backwards transform for GPU (#1247)Gravatar David Grote 1-1/+1
2020-08-13Fix RZ PSATD backward transform for icomp > 0 (#1246)Gravatar David Grote 1-4/+3
2020-08-06Galilean PSATD: current correction and rho-free formulation (#1151)Gravatar Edoardo Zoni 14-164/+458
* Introduce option to update E with/without rho * Clean up * Implement current correction for Galilean PSATD (needs bug fix) * Include equations in docs * Fix EOL whitespaces error * Small clean-up * Implement Galilean PSATD update without rho * Clean up * Fix bug in current correction * Fix EOL whitespaces * Clean up * Fix unused import * Remove unused variable * [skip CI] Improve docs * Clean up style * Fix EOL whitespaces * Fix EOL whitespaces * Clean up style * Revert analysis script to old status * [skip CI] Clean up style * Make equations more human-readable and improve comments * 2D test with current correction works * Temporary build fix as in #1197 * 3D test with current correction works * Rename th and th_star as theta and theta_star * Fix a couple of wrong comments * Add vertical spaces to improve readability * Improve documentation * Function CurrentCorrection is now pure * 2D benchmark fields data are now correct * Add limits of coefficients for nu=-1 * Change default of update_with_rho for Galilean PSATD
2020-08-03Fix bug in imaginary part of divE (#1233)Gravatar Edoardo Zoni 1-1/+1
2020-07-27Added k-space filter for RZ spectral solver (#1006)Gravatar David Grote 11-5/+217
* Added k-space filter for RZ spectral solver * Added SpectralBinomialFilter files for RZ spectral solver * Added RZspectral binomial filter to CMakeLists.txt * Update Docs/source/running_cpp/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Docs/source/running_cpp/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralBinomialFilter.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralBinomialFilter.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/FieldSolver/SpectralSolver/SpectralFieldDataRZ.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Fixed literals in SpectralBinomialFilter.cpp * For RZ spectral, apply filter to rho old and new * Added SpectralBinomialFilter::InitFilterArray * For SpectralBinomialFilter, combine R and Z into one routine Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * For SpectralBinomialFilter, combine R and Z into one routine, part 2 Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * For SpectralBinomialFilter, combine R and Z into one routine, part 3 Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-07-24Fix -Wextra-semi (#1207)Gravatar Axel Huebl 4-19/+19
Remove unnecessary semicolons (fix compiler warnings).
2020-07-22Cleaner calculation of the simulation timestep (#1031)Gravatar Remi Lehe 4-0/+82
* Cleaner calculation of the simulation timestep * Fix compilation errors * Remove specification of CKC solver in PSATD test * Correct calculation of dt * Fix compilation error * Cleaner calculation of the simulation timestep * Fix compilation errors * Remove specification of CKC solver in PSATD test * Correct calculation of dt * Fix compilation error * Cleanup for cylindrical * Change input of automated tests to preserve previous results * Fix import statement for cylindrical * Preserve dt for PML test * Move function documentation to WarpX.H * Update CMakeList * Update CFL in some tests * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Fix compilation errors * Revert "Fix compilation errors" This reverts commit 56ef67f228269b266876629f49789d3afdbbc00b. * Fix compilation error * Add cmath headers Add directly used header files. * Fix Include Order Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2020-07-20Vay current deposition (#1051)Gravatar Edoardo Zoni 16-12/+245
* Added stub for current correction in RZ spectral solver * Start implementation of Vay deposition * Continue implementation of Vay deposition * Correct deposition of D * Add phase shift for staggered currents * Small clean-up * Fix units in deposition of D * Implement average of cumulative sum (needs bug fix) * Start fixing bug in average of cumulative sum * Still debugging * Cumulative sums should be correct now * Subtract averages of cumulative sums: - current implementation: cumulative sums, inverse Fourier transform, subtraction of averages - needs to be tested (including units of D after Vay deposition) - needs to be shortened (too many loops over boxes and ParallelFors) * [skip CI] Clean up and fix units * Still fixing units * [skip CI] Remove temporarily averages of cumulative sums * [skip CI] Remove distinction between staggered and nodal * Vay and Esirkepov similar results on periodic single box: TODO: - debug (charge not conserved); - try using compute_shifted_shape_factor as in Esirkepov deposition; - clean up; - try on multiple boxes and with correction of mode at 0 frequency. * [skip CI] Clean up * Fix bug in 3D deposition * [skip CI] Clean up * Fix 2D and 3D implementation: - simulation results agree between direct and Vay deposition in both 2D and 3D - Travis CI tests should pass except for check of charge conservation (debug) * Small clean-up * Fix bug when compiling in RZ geometry * Add benchmark json files (will be reset later) * Do not set zero current at zero frequency * [skip CI] Revert last commit and clean up * Fix small bug after reverting commit * Set nodal test first on Travis * Fix benchmark for nodal test in 3D * Fix particle output for nodal test in 3D * Fix bugs due to staggering * Rename current nodal Travis tests * Add Travis tests staggered in 2D and 3D * Further clean-up after bug fix * Abort when using Vay deposition with domain decomposition * Add optional argument of index type to forward FFT * Fourier shifts can be private members as before * Small clean-up * Clean up and improve Doxygen documentation * Fix small bug in analysis script for 2D tests * Fix tests (remove E and B fields from particle diags) * Add option to fill guard cells and docs * Fix value of last guard cell by enforcing periodicity * Revert changes merged from #1121 * Clean up style * Improve docs * Fix forgotten alignment * Improve docs * Make base class functions VayDeposition pure Co-authored-by: Dave Grote <dpgrote@lbl.gov>
2020-07-17Fixing compiler warnings (#1178)Gravatar Olga Shapoval 1-13/+2
* Removed unused variables and made 'vy=v_galilean[1]' declaration conditional on 3D case (this fixes compiler warnings) * Avoid unnecessary conversion from 'double' to 'int' (this fixes compiler warnings)
2020-07-17For RZ, fix the deposition near the axis (#1072)Gravatar David Grote 1-17/+16
* For RZ, fix the deposition near the axis * Updated LaserAccelerationRZ checksum The change was expected since the code changes modified the charge and current density near the axis. * Updated LaserAccelerationRZ checksum The change was expected since the code changes modified the charge and current density near the axis. * Update benchmark Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2020-07-15Add support for infinite-order PSATD (#1169)Gravatar danielbelkin 1-49/+65
* Set k_modified = k for inf order * Add support for nox = inf in input file * Added infinite-order to documentation * Add back in accidentally-removed line * End-of-line whitespaces? * End-of-line whitespaces. * Remove vspace Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Remove vspace Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Add whitespace Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Remove unnecessary line Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Whitespace Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Remove whitespace * Clarify error message Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * ...whitespace Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2020-07-14Fix bug in RZ PSATD rho terms (#1172)Gravatar David Grote 1-2/+2
2020-07-14make fft_do_time_averaging a member of class WarpX (#1165)Gravatar MaxThevenet 3-8/+5
2020-07-10Fix compilation of AvgGalilean for GPU (#1159)Gravatar Remi Lehe 2-2/+18
2020-07-08Averaged Galilean PSATD (#869)Gravatar Olga Shapoval 9-18/+456
* Read Galilean velocity * Prepare structures for Galilean solver * Started implementing Galilean equations * Analytical limits for X1, X2, X3, X4 coefficients added * Slight changes added * Added Galilean position pusher * Scale galilean velocity * Remove unneeded Abort * Fix Galilean pusher * Allocate Theta2 array * Fix definition of coefficients * Increase guard cells for Galilean * Add guard cell in particle exchange * Added modifications for PICSAR galilean branch * Averaged coefficients added * Type corrected * v_gal added to warpx_current_deposition * v_gal added to WarpXParticleContainer.H * Bug fixed - update particle x-position over one time step * Fix issues with merge from dev * Averaged fileds allocated on fine patch (Ex) * Preparation for merging dev into galilean. * remove TABs by hand * Removed a tab. * Redeclared v_galilean as a vector & related changed * Added an automated test * Moved v_galilean inside WarpX constructor * Added analysis script for the automated test * Changed name of the automated test to galilean_psatd * Added InitializeSpectralCoefficients method * Removed temporary comments * Averaged fields added to FiledGather * Added infinite order k[i] * Setting kx_mod( kz_mod) = 0 for index = nx/2(-nz/2) * Adding galilean shift * Implemented galilean shift * Changed method's name from GalileanShift to ShiftGalileanBoundary * Added doxygen string for ShiftGalileanBoundary * Removed never used method LowerCornerWithCentering * Removed temporary comments * Removed dt as a variable from DepositCharge method and its dependencies * Changing type of v_galilean from amrex::Vector to amrex::Array * Changed back ng_fft to be equal nox_fft * Changed v_galilean's type from amrex::vector to amrex::array * Removed type * Removed temporary comments * Added flag 'do_time_averaging' to swith from unaveraged to averaged Galilean PSATD * Updated doxygen * Small fix on using 'do_time_averaging' flag * Remove some commented Print statements * [skip ci] Further cleanup * Fix compilation * Guard cells update of the averaged E,B fields * Corrected included header file accordingly * Removed EOL * Removed EOL * Corrected path of the included header file * Updated choice of the spectral solver. * Cleanup. * use amrex::exp instead of std::exp * no backward FFT for avg fields if avg is off * Need to shift avg fields in MoveWindow * Further cleaning * Added 2D automated test for averaged PSATD * Added automated 2D and 3D tests for averaged PSATD * Removed comments * Added specifications for averaged Galilean PSATD tests. * Bug fixed - do FillBoundary of the averaged fields only if averaged is activated * Do shiftMF of the averaged fields only if fft_do_time_averaging=true * Add checksum json benchmarks for averaged Galilean PSATD * Add missing indentation * Add missing indentation * Updated automated analysis script * Updated diags period * Fixed bug: no backtransform of the averaged fields when WARPX_DIM_RZ is set * Fixed an uninitialized variable * Clean-up * Changed permissions for analysis_avg_*d.py * Compactified variables initialization via conditional assignment * Initialized averaged E_avg, B_avg fields * Updated automated test for 2D averaged galilean PSATD * Updated benchmark for 2D averaged galilean PSATD * Updated automated 2D averaged PSATD test & benchmark * Updated automated 3D averaged PSATD test & benchmark * Fixed typo * Updated benchmark averaged_galilean_3d_psatd * Initialize the averaged fields only if the averaged Galilean PSATD algorithm is enabled * Encreased time step for automated 3D averaged Galilean PSATD (to be equal c*dt=dz while dz/dx=3) * Updated 3D automated test: specified standard deviations `.ux_th, .uy_th, .uz_th` along each direction * Typo from the previous commit: enabled the averaged algorithm * Trying out another input parameters for 3D averaged automated test with v_gal = v_plasma * Update benchmark for previously added 3D averaged automated test * Update 2D averaged automated test and corresponding benchmark * Revert "Updated diags period" This reverts commit 7334729b05e96589e020c981efdb430ca095991d. * Cleanup: removed unwanted comment. * Added descriptions of the 2D and 3D automated tests for the averaged Galilean PSATD. * Updated value calculated via standard Galilean PSATD. * Encreased relative error tolerance for 3D automated test for the averaged Galilean PSATD. * Removed to avoid duplication since it already specified in the corresponding 2D/3D input scripts. * Removed unwanted empty lines * Added spaces after function's names * Removed unwanted empty line * Removed * Fixed indentation * Cleanup: removed #include <math.h> * Cleanup: removed empty lines and fixed indentation * Added 'AvgGalileanAlgorithm.cpp' to 'CMakeLists.txt' Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
2020-07-06PSATD: add option to update E without using rho (#1128)Gravatar Edoardo Zoni 4-53/+87
* Introduce option to update E with/without rho * Clean up * Include equations in docs * Fix EOL whitespaces error * Small clean-up * Clean up
2020-07-02PSATD: current correction works only with global FFTs (#1131)Gravatar Edoardo Zoni 1-9/+9
* Clean up implementation of current correction: - abort when current correction runs with psatd.periodic_single_box_fft=0 - rename input parameter from psatd.do_current_correction to psatd.current_correction - add nodal tests in 2D and 3D (using direct current deposition) - change 2D test: use Esirkepov deposition, instead of direct, as in 3D test - add/update relevant checksum benchmarks * Small clean-up
2020-06-12Add CMake Scripts (#759)Gravatar Axel Huebl 7-5/+82
* [skip travis] CMake: Add CMake Scripts This add CMake scripts for the CMake build system generator. * CUDA Support Achieved Fastest compile via: cmake .. -DENABLE_CUDA=ON -DCUDA_ARCH=6.0 * CMake: openPMD & QED * CMake: Dimension Support WarpX_DIMS=2,3,RZ * CCache & Out-of-Source Enable CCache when found and prevent in-root builds (in-source okay-ish). * CMake: CUDA C++ Language Minimum * Add new Files * CI: Migrate macOS to CMake * Fortran: Enable Because Transitive ... for now :) * CI: Migrate Linux ICC to CMake * CI: Verbose Make * CMake: Add Missing PSATD Sources * CMake: PSATD, Compute, Precision, Clean
2020-05-29Encapsulate FFTs (#1055)Gravatar MaxThevenet 6-218/+303
* wrap fft libraries * implementation in cpp to avoid duplicate symbole * delete some fftw code * further cleaning * typo * pass fft plans by reference * fix bug due to typo. Dammit, macros sometimes make it hard * FFT wrapper also support cuFFT (not tested yet) * eol * further cleaning * fix cuFFT, tested on Summit * clean WarpX Complex checks * pass directly the IntVect instead of the components (what were you thinking?) * add some amrex prefix * add a few const * Should not need an FFT library to compile FDTD * gather all FFT header files into one. * eol * minor changes in code comments. * let dimension be chosen at runtime instead of at compile-time * fix compilation on GPU * add description to the wrapper namespace
2020-05-29Macroscopic EvolveE with constant properties (#991)Gravatar Revathi Jambunathan 7-0/+275
* Adding macro-E Push and new file * Add macroEvolveE, call it, and include algo selection in utils * fix eol * Fixing bug in macroE for sigma method 1 * changing MacroEvolveE to MacroscopicEvolveE * add class for macroscopicproperties and an object in WarpX class * fix eol * adding templated ckc call with comment that EvolveE is same for yee and ckc * add header file pointing to ckc algorithm * adding obejct m_macroscopic_properties to access sigma,eps,mu * some cleaning * Adding comments * adding documentation * spelling wandroff to wendroff * fixing eol * eol * const in the right place. Thanks bot! * profiler for macroscopic evolveE * re-introduced deleted line when fixing conflict to declare templated EvolveBPMLCartesian function * fixing if-else statement for RZ in MAcroscopicEvolveE.cpp * adding suggestions and corrections made in PR review. * fixing grammar in docs * fix eol whitespace * fix typo
2020-05-29Set particular modified wavenumbers to 0 for spectral (nodal). (#1030)Gravatar Olga Shapoval 1-0/+18
* Set particular modified wavenumbers to 0 for spectral (nodal). * Add comments Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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