| Age | Commit message (Collapse) | Author | Files | Lines |
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* add more readability checks to clang-tidy CI test
* reformat check list
* starting to address issues found with clang-tidy£
* addressing issues
* remove check
* address issues
* address all issues
* address issue found with github code scanning
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* pyAMReX: Build System
* CI Updates (Changed Options)
* Callback modernization (#4)
* refactor callbacks.py
* added binding code in `pyWarpX.cpp` to add or remove keys from the callback dictionary
* minor PR cleanups
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Added Python level reference to fetch the multifabs (#3)
* pyAMReX: Build System
* Added Python level reference to Ex_aux
* Now uses the multifab map
* Fix typo
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Add initialization and finalize routines (#5)
A basic PICMI input file will now run to completion.
* Regression Tests: WarpX_PYTHON=ON
* Update Imports to nD pyAMReX
* IPO/LTO Control
Although pybind11 relies heavily on IPO/LTO to create low-latency,
small-binary bindings, some compilers will have troubles with that.
Thus, we add a compile-time option to optionally disable it when
needed.
* Fix: Link Legacy WarpXWrappers.cpp
* Wrap WarpX instance and start multi particle container
* Fix test Python_pass_mpi_comm
* Start wrapper for multiparticle container
* Add return policy
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update fields to use MultiFabs directly
Remove EOL white space
Removed old routines accessing MultiFabs
Update to use "node_centered"
* Fix compilation with Python
* Update fields.py to use modified MultiFab tag names
* Remove incorrect, unused code
* Add function to extract the WarpX MultiParticleContainer
* Complete class WarpXParticleContainer
* Wrap functions getNprocs / getMyProc
* restore `install___` callback API - could remove later if we want but should maintain backward compatibility for now
* add `gett_new` and `getistep` functions wrappers; fix typos in `callbacks.py`; avoid error in getting `rho` from `fields.py`
* Update callback call and `getNproc`/`getMyProc` function
* Replace function add_n_particles
* Fix setitem in fields.py for 1d and 2d
* also update `gett_new()` in `_libwarpx.py` in case we want to keep that API
* added binding for `WarpXParIter` - needed to port `libwarpx.depositChargeDensity()` which is an ongoing effort
* Wrap function num_real_comp
* added binding for `TotalNumberOfParticles` and continue progress on enabling 1d MCC test to run
* add `SyncRho()` binding and create helper function in `libwarpx.depositChargeDensity` to manage scope of the particle iter
* Clean up issues in fields.py
* update bindings for `get_particle_structs`
* Fix setitem in fields.py
* switch order of initialization for particle container and particle iterator
* switch deposit_charge loop to C++ code; bind `ApplyInverseVolumeScalingToChargeDensity`
* move `WarpXParticleContainer.cpp` and `MultiParticleContainer.cpp` to new Particles folder
* added binding for `ParticleBoundaryBuffer`
* More fixes for fields.py
* Fix: Backtraces from Python
Add the Python executable name with an absolute path, so backtraces
in AMReX work. See linked AMReX issue for details.
* Cleaning
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Fix: Backtraces from Python Part II
Do not add Python script name - it confuses the AMReX ParmParser to
build its table.
* Fix: CMake Dependencies for Wheel
This fixes a racecondition during `pip_install`: it was possible
that not all dimensions where yet build from pybind before we
start packing them in the wheel for pip install.
* MCC Test: Install Callbacks before Run
Otherwise hangs in aquiring the gil during shutdown.
* addition of `Python/pywarpx/particle_containers.py` and various associated bindings
* Fix: CMake Superbuild w/ Shared AMReX
We MUST build AMReX as a shared (so/dll/dylib) library, otherwise
all the global state in it will cause split-brain situations, where
our Python modules operate on different stacks.
* add `clear_all()` to callbacks in order to remove all callbacks at finalize
* add `-DWarpX_PYTHON=ON` to CI tests that failed to build
* add `get_comp_index` and continue to port particle data bindings
* Add AMReX Module as `libwarpx_so.amr`
Attribute to pass through the already loaded AMReX module with the
matching dimensionality to the simulation.
* Fix for fields accounting for guard cells
* Fix handling of ghost cells in fields
* Update & Test: Particle Boundary Scraping
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* CI: Python Updates
- modernize Python setups
- drop CUDA 11.0 for good and go 11.3+ as documented already
```
Error #3246: Internal Compiler Error (codegen): "there was an error in verifying the lgenfe output!"
```
* CI: Python Updates (chmod)
* Add support for cupy in fields.py
* Add MultiFab reduction routines
* CI: CUDA 11.3 is <= Ubuntu 20.04
* changed `AddNParticles` to take `amrex::Vector` arguments
* setup.py: WarpX_PYTHON=ON
* update various 2d and rz tests with new APIs
* add `-DWarpX_PYTHON_IPO=OFF` to compile string for 2d and 3d Python CI tests to speed up linking
* CI: -DpyAMReX_IPO=OFF
* CI: -DpyAMReX_IPO=OFF
actually adding `=OFF`
* CI: Intel Python
* CI: macOS Python Executable
Ensure we always use the same `python3` executable, as specified
by the `PATH` priority.
* CMake: Python Multi-Config Build
Add support for multi-config generators, especially on Windows.
* __init__.py: Windows DLL Support
Python 3.8+ on Windows: DLL search paths for dependent
shared libraries
Refs.:
- https://github.com/python/cpython/issues/80266
- https://docs.python.org/3.8/library/os.html#os.add_dll_directory
* CI: pywarpx Update
our setup.py cannot install pyamrex yet as a dependency.
* ABLASTR: `ablastr/export.H`
Add a new header to export public globals that are not covered by
`WINDOWS_EXPORT_ALL_SYMBOLS`.
https://stackoverflow.com/questions/54560832/cmake-windows-export-all-symbols-does-not-cover-global-variables/54568678#54568678
* WarpX: EXPORT Globals in `.dll` files
WarpX still uses a lot of globals:
- `static` member variables
- `extern` global variables
These globals cannot be auto-exported with CMake's
`WINDOWS_EXPORT_ALL_SYMBOLS` helper and thus we need to mark them
manually for DLL export (and import) via the new ABLASTR
`ablastr/export.H` helper macros.
This starts to export symbols in the:
- WarpX and particle container classes
- callback hook database map
- ES solver
* CI: pywarpx Clang CXXFLAGS Down
Move CXXFLAGS (`-Werror ...`) down until deps are installed.
* GNUmake: Generate `ablastr/export.H`
* CMake: More Symbol Exports for Windows
* `WarpX-tests.ini`: Simplify Python no-IPO
Also avoids subtle differences in compilation that increase
compile time.
* Update PICMI_inputs_EB_API.py for embedded_boundary_python_API CI test
* Fix Python_magnetostatic_eb_3d
* Update: Python_restart_runtime_components
New Python APIs
* Windows: no dllimport for now
* CI: Skip `PYINSTALLOPTIONS` For Now
* CMake: Dependency Bump Min-Versions
for external packages picked up by `find_package`.
* Fix F and G_fp names in fields.py
* Tests: Disable `Python_pass_mpi_comm`
* Wrappers: Cleanup
* pyWarpX: Include Cleaning
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* fields.py: Fix F and G Wrappers
Correct MultiFab names (w/o components).
* Remove unused in fields.py
* Windows: New Export Headers
- ABLASTR: `ablastr/export.H`
- WarpX: `Utils/export.H`
* removed `WarpInterface.py` since that functionality is now in `particle_containers.py`; removed parts of `WarpXWrappers.cpp` that have been ported to pyamrex
* CMake: Link OBJECT Target PRIVATE
* CMake: Remove OBJECT Target
Simplify and make `app` link `lib` (default: static). Remove OBJECT
target.
* Fix in fields.py for the components index
* Update get_particle_id/cpu
As implemented in pyAMReX with
https://github.com/AMReX-Codes/pyamrex/pull/165
* WarpX: Update for Private Constructor
* Import AMReX Before pyd DLL Call
Importing AMReX will add the `add_dll_directory` to a potentially
shared amrex DLL on Windows.
* Windows CI: Set PATH to amrex_Nd.dll
* CMake: AMReX_INSTALL After Python
In superbuild, Python can modify `AMReX_BUILD_SHARED_LIBS`.
* Clang Win CI: Manually Install requirements
Sporadic error is:
```
...
Installing collected packages: pyparsing, numpy, scipy, periodictable, picmistandard
ERROR: Could not install packages due to an OSError: [WinError 32] The process cannot access the file because it is being used by another process: 'C:\\hostedtoolcache\\windows\\Python\\3.11.4\\x64\\Lib\\site-packages\\numpy\\polynomial\\__init__.py'
Consider using the `--user` option or check the permissions.
```
* Hopefully final fixes to fields.py
* Update getProbLo/getProbHi
* Set plasma length strength
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Fix fields method to remove CodeQL notice
* Update Comments & Some Finalize
* Move: set_plasma_lens_strength
to MPC
---------
Co-authored-by: Roelof Groenewald <40245517+roelof-groenewald@users.noreply.github.com>
Co-authored-by: David Grote <dpgrote@lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
Co-authored-by: Dave Grote <grote1@llnl.gov>
Co-authored-by: Roelof Groenewald <regroenewald@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* Clang Tidy: add several modernize checks
* eliminate file included in commit by mistake
* fix bug
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* replace amrex::Abort with WarpX macros
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* adding back missing include
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* use amrex::Abort in a GPU kernel
* bump precision
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* Multi-Dim Buildsystem Support
* Docs
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generated (#3873)
Add thin wrapper aroung amrex::Gpu::DeviceVector in order to be able to use it in lookup tables also when managed memory is not used.
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* remove some magic numbers
* fixed unreachable code issue
* fixed issue with unreachable code
* fixed issue with unreachable code
* remove type traits
* revert one change in Gaussian Laser
* improved ParticleExtrema
* fix bug
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* Fixes to allow mixed precision, ParticleReal float, Real double
* Fix for the optical depth
* A different way of fixing QuantumSynchrotronEvolveOpticalDepth
* In the QED code, consistently use ParticleReal
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* Add precision to printed PIC parameters
* Added WarpX_PARTICLE_PRECISION as a build option
* Update types to ParticleReal
* Updated libwarpx to inject particles with correct ParticleReal type
* Fix syntax error
* Add logic to avoid duplicate definitions
* Use correct ParticleReal type in add_particles
* Cleaned up code, addressed comments
* Update Python/pywarpx/_libwarpx.py
Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com>
* Removed redundant functions, fixed some typing
* Modified template functions
* Cast d_w to Real
* Fixed failing tests
* Cast types to be consistent
* removed in-tree-build from pip command
* Added GPU device macros to PDim3 methods
* rerun tests
* Removed unecessary casting, update calls to use PDim3 instead of XDim3
* Refactored comments
* Added mcc fields double precision, particles single precision test
* Updated casting and formatting
* Removed cast, updated declaration
Co-authored-by: Peter Scherpelz <peter.scherpelz@modernelectron.com>
Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com>
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* implement some clang-tidy suggestions
* Update loop
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Fix Doxygen: Particles
Fix doxygen errors & warnings.
* Apply suggestions from code review
Co-authored-by: Luca Fedeli <luca.fedeli@for.unipi.it>
Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com>
* Apply suggestions from code review
* Document ForwardIterator
* Fix tparam and comma
Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com>
Co-authored-by: Luca Fedeli <luca.fedeli@for.unipi.it>
Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com>
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* Fix: Missing Include Guards (FWD)
All header files need include guards to avoid double definitons.
* Fix copy-paste guard
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* initial tests with IWYU
* added a couple of forward declarations
* used iwyu on more files
* progress
* used iwyu on more files
* progress with iwyu
* progress with iwyu
* fixed bug
* progress with iwyu
* progress with IWYU
* progress with IWYU
* fixed bug
* fixed bug
* progress with IWYU
* progress with IWYU + use forward declarations in WarpX.H
* first try with .def files
* fix bugs
* progress with IWYU
* progress with IWYU
* progress with iwyu
* correct copyright
* fixed bug
* fixed bugs
* fix missing include
* fixed bug
* fix bug
* fix bug introduced during last bugfix
* use iwyu on newly added files
* add space
* fix bug
* fix missing include
* fix missing include
* fix missing include
* fixed bugs
* fixed bug
* attempt at fixing issue with math functions
* added missing include
* fixed missing include
* using _fwd.H
* fixed bug
* progress with iwyu
* update AMReX branch
* enforce alphabetic order
* progress with iwyu
* use right version of amrex
* use right version of amrex for tests
* fixed bug
* fix another bug
* fix missing include
* fix missing include
* fix missing include
* updated amrex
* initial work to document new include strategy
* updated documentation
* Fix rst & private includes
* Remove accidentially added files
* Fix rst code blocks
* one more rst block
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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(#1741)
* Replace amrex::Real with amrex::ParticleReal where appropriate
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
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* updated doc
* updated cmake
* fixed bug
* updates to take into account modifications in picsar_qed folder structure
* fixed bug
* fixed bug
* picsar/improve_makefile is now used for tests
* use sycl fix with picsar_qed
* update defines for picsar
* Update PICSAR Git Links
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* fix warning concerning comparison of int and unsigned int
* fix warning concerning unused variables
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* Use amrex::ParallelForRNG for random number generation
In order to support RNG on non-Nvidia GPUs, we need to use
amrex::ParallelForRNG for kernels with calls to AMReX random number
generation functions.
* missing a RandomEngine argument
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* Initial work to couple improved QED module to WarpX
* WIP to couple with WarpX the new QED library
* Continuing work to couple the new version of the QED library with WarpX
* progress towards completing coupling with new version of QED library
* WarpX coupled with new version of QED library
* default behavior is to display table generation progress
* some host device functions are now device only
* fixed bug
* bugfixing
* updating tests
* updated test
* updated test
* added initial version of tests (not working)
* added check and updated a comment
* fixed bug
* added inputfiles and analysis script for new BW tests
* test for BW process are ready
* modified test
* make lgtm happy
* removed TABs
* initial work to add QS tests (not working)
* removed old tests
* fixed bug in script
* changed position of evolution of optical depth
* progress with QSR tests
* improved test
* very low energy photons are always eliminated
* added tests to regression suite
* improved test
* improved tests
* removed redundant parameter
* removed trailing white space
* updated documentation
* fix lgtm warnings
* fixed missing check on chi parameter
* fixed missing check on chi parameter & bugfixing
* improved comments
* increased tolerance in tests
* updated units in test
* now test succeds if the error is extremely small
* updated checksums
* fixed bug
* fixed some unused or uninitialized variables warnings
* now using ignore_unused instead of commenting out some variables
* fixed warnings
* partial fix of a test
* fixed test
* fixed test
* added checksums
* fixed tests
* fixed benchmark for qed_schwinger2
* removed checksums for tests which do no exist anymore
* fixed checksums for several qed tests
* fixed checksums for several qed tests
* fixed checksums
* removed unwanted checksum
* fixed checksum
* removed files which should have been deleted
* add some const
* [skip ci] added some docstrings and some const
* Update Source/Particles/ElementaryProcess/QEDInternals/BreitWheelerEngineWrapper.H
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/ElementaryProcess/QEDInternals/BreitWheelerEngineWrapper.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/ElementaryProcess/QEDInternals/QuantumSyncEngineWrapper.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* added some docstrings and some const
* replaced ManagedVectors with DeviceVectors
* Update Source/Particles/ElementaryProcess/QEDInternals/QedWrapperCommons.H
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* added some const
* removed unwanted assert
* updated comment
* changed position of GPU synchronization directive
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/breit_wheeler/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/breit_wheeler/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* add do_plot option to some analysis scripts
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* uncomment a line
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* simplified input scripts for BW tests
* simplified input scripts for QS tests
* removed unwanted files
* simplified analysis script
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* reverted modification to schwinger analysis script
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* remove outdated comment
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Source/Particles/MultiParticleContainer.cpp
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* fix warnings
* made test more robust
* reset benchmark for qed_breit_wheeler_2d
* fixed bug in test
* make test more robust
* made test more robust
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update Examples/Modules/qed/quantum_synchrotron/analysis.py
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
* Update run_test.sh
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Tools <warpx@lbl.gov>
Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* add functor for doing the tmp particles copy for the back-transformed diagnosti
* merge the particle push options into one kernel
* EOL
* fix assertion
* add a FieldGatherandPushPX method to PhysicalParticleContainer
* handle offset in copyAttribs
* allow this functor to be constructed even it we aren't doing the back transformed diagnostics
* EOL
* update the overloads of PushPX for the Photon and RigidInjected ParticleContainers
* function for dispatching the right field gather
* init this val to 0.0
* fix some typos
* handle scaling the fields for rigid injection
* EOL
* don't need to get pointers to E and B arrays in PushPX any more.
* actually I can't remove these yet
* EOL
* variable order bug
* move the QED stuff to the proper place
* EOL
* make sure we don't build these functors unless the runtime options are toggled
* EOL
* perform the field gather prior to the photon particle push
* remove E and B components and FieldGather methods. Reimplement PushP for rigid injected and physical particles
* update ionization to do field gather inline
* remove E and B from the particle diagnostics
* don't write E or B in these tests for particles
* add missing files
* remove EB from the Regtest ini file too
* no need to do this twice
* important typo
* also do the gather inline for the QED processes that need to
* move these sources inside ifdef for QED
* fix bug in RZ
* remove some fields from the Python tests.
* remove all particle E and B comps from json benchmarks
* don't assert that Ey is the langmuir output
* remove uy from this output
* update test
* restore the mesh fields I turned off by mistake
* turn off field IO for a few python tests I missed
* fix typo
* reset Langmuir_multi benchmark
* update Langmuir_multi_nodal benchmark
* update single precision langmuir bench
* update psatd single precision languir one too
* also do ionization_lab
* finally, ionizaiton_boost
* update benchmarks_json/Langmuir_multi_psatd.json
* update benchmarks_json/Langmuir_multi_psatd_current_correction.json
* update benchmarks_json/Langmuir_multi_psatd_momentum_conserving.json
* update benchmarks_json/Langmuir_multi_psatd_nodal.json
* remove the particle E and B from the choices in the docs
* fix offset bug
* also add the Gather subdirectory
* Update Source/WarpX.H
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* add docstring for LowerCornerWithGalilean
* add new source files to CMakeLists.txt
* also need to update the GPU regression tests
* update the name of the output file for this python test
* remove field gather call from FieldDiagnostics
* fix typo in docstring
* init fields to 0
* add docstring to the CopyParticleAttribs constructor
* some explicit amrex::namepace
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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* [skip travis] CMake: Add CMake Scripts
This add CMake scripts for the CMake build system generator.
* CUDA Support Achieved
Fastest compile via:
cmake .. -DENABLE_CUDA=ON -DCUDA_ARCH=6.0
* CMake: openPMD & QED
* CMake: Dimension Support
WarpX_DIMS=2,3,RZ
* CCache & Out-of-Source
Enable CCache when found and prevent in-root builds (in-source okay-ish).
* CMake: CUDA C++ Language Minimum
* Add new Files
* CI: Migrate macOS to CMake
* Fortran: Enable Because Transitive
... for now :)
* CI: Migrate Linux ICC to CMake
* CI: Verbose Make
* CMake: Add Missing PSATD Sources
* CMake: PSATD, Compute, Precision, Clean
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* Initial work to add back QED particle generation
* Work in progress: port old QED routines
* Add two distinct CopyFuncs
* modified getMFItInfo and CopyFunc (not working)
* bugfixing & work to add back QED particle creation routines
* bugfixing
* added back quantum photon emission
* bugfixing
* bugfixing
* added back pair generation (still some bugs in photon emission)
* removed unwanted check
* bugfixing
* bugfixing
* bugfixing
* Moved QED folder
* added comments + some refactoring
* added comments
* remove some virtual functions to make lgtm happy
* updated tests
* added PhysicalParticleType
* bugfixing
* added copyright
* improved comments
* improved comments
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* moved inclusion of QEDInternals folder
* moved some inclusion directives between Make files
* moved some inclusion directives between Make files (forgot to add a file)
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* corrected alignment
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* removed some unnecessary amrex::
* add missing comment
* Replaced BL_PROFILE with WARPX_PROFILE
* bugfixing and making some variables const
* removed some moves
* removed some moves
* started to change tau into optical_depth_BW or optical_depth_QSR
* Using initialization policy to initialize optical depth
* bugfixing
* forgot to add a file
* fixed bug
* Revert "fixed bug"
This reverts commit a3fb98d10cc30327635aeaa71451a05ca2229ff4.
* Define doQEDSchwinger function
* Read input parameters for Schwinger process
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Added doQEDEvents to OneStep_sub1
* add a bunch of const
* add _rt suffix
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added path to included files
* Introduced a templated AmIA<something> function using physical_species
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added paths to included headers
* updated documentation
* updated examples
* bugfixing
* bugfixing
* fixing examples
* fixed example
* fixed example
* correct a misprint in error message
* fixed issue related to 1./mass for photons
* Add skeleton of doQEDSchwinger function
* Linked to PICSAR to calculate pair production rate
* Added missing header file
* fix conflicts in QEDPhotonEmission.H
* Written first version of FilterCreateTransformFromFAB.H
* Cleanup some useless comments
* Update Source/Particles/ElementaryProcess/QEDInternals/SchwingerProcessWrapper.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Minor revisions and improvements
* Remove trailing white spaces
* Write filter function
* Remove print
* Some debugging and cleaning
* Write tranform function
* remove transform_dummy
* Added some tests
* Remove EOL whitespaces
* update prepare_file_travis.py
* Should fix error in automated tests
* Make the tests run in parallel
* Put path relative to Source/ in includes
* update include path
* Actually resolve conflicts
* put dVdt and weight_index as members of filter and transform functions
* a bit of debugging on GPU
* Add comments and documentation
* Fix typos
* Add assert for single precision
* Update Docs/source/running_cpp/parameters.rst
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/MultiParticleContainer.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-Authored-By: Luca Fedeli <luca.fedeli.88@gmail.com>
* Add profiler and minor modifications
* Fix typo
* Update asserts so that module works with momentum conserving algo
* update assert if particles are created in analysis script
* Apply suggestions from code review
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Add comments to FilterCopyTransform and FilterCreateTransform functions
* Add const and comment
* Update Source/Particles/ParticleCreation/FilterCreateTransformFromFAB.H
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
* Update test for new diags and remove AllContainerType
* Update Regression/WarpX-tests.ini
* update test
* update tests
* Split Schwinger test into 4 separate tests
* Change name of analysis script
* update tests
* Combine all analysis scripts into a single one
Co-authored-by: Luca Fedeli <luca.fedeli@cea.fr>
Co-authored-by: Luca Fedeli <luca.fedeli.88@gmail.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Neil <nzaim@iram-fe-003981.extra.cea.fr>
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Remove the listing of all header-files from the Make-buildsystem.
Listing public header files here tells the AMReX Makefile build
system to install those in an install step after build. WarpX is
currently not building a public library which can be consumed by
users for their projects and only an executable.
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* Initial work to add back QED particle generation
* Work in progress: port old QED routines
* Add two distinct CopyFuncs
* modified getMFItInfo and CopyFunc (not working)
* bugfixing & work to add back QED particle creation routines
* bugfixing
* added back quantum photon emission
* bugfixing
* bugfixing
* added back pair generation (still some bugs in photon emission)
* removed unwanted check
* bugfixing
* bugfixing
* bugfixing
* Moved QED folder
* added comments + some refactoring
* added comments
* remove some virtual functions to make lgtm happy
* updated tests
* added PhysicalParticleType
* bugfixing
* added copyright
* improved comments
* improved comments
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* moved inclusion of QEDInternals folder
* moved some inclusion directives between Make files
* moved some inclusion directives between Make files (forgot to add a file)
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/PhysicalParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* corrected alignment
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* removed some unnecessary amrex::
* add missing comment
* Replaced BL_PROFILE with WARPX_PROFILE
* bugfixing and making some variables const
* removed some moves
* removed some moves
* started to change tau into optical_depth_BW or optical_depth_QSR
* Using initialization policy to initialize optical depth
* bugfixing
* forgot to add a file
* fixed bug
* Revert "fixed bug"
This reverts commit a3fb98d10cc30327635aeaa71451a05ca2229ff4.
* Update Source/Particles/ElementaryProcess/QEDPairGeneration.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Added doQEDEvents to OneStep_sub1
* add a bunch of const
* add _rt suffix
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added path to included files
* Introduced a templated AmIA<something> function using physical_species
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* added paths to included headers
* updated documentation
* updated examples
* bugfixing
* bugfixing
* fixing examples
* fixed example
* fixed example
* correct a misprint in error message
* fixed issue related to 1./mass for photons
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/MultiParticleContainer.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* Update Source/Particles/ElementaryProcess/QEDPhotonEmission.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
* make the use of energy_threshold more transparent
* remove unnecessary checks
* bigfixing
* added comment
* separate checks for QED processes
* added a CheckIonizationProductSpecies for consistency
* bugfixing
* now using a new variable for photon energy creation threshold
* removed unwanted comment
* added option to set a user-defined threshold for photon creation
* bugfixing
* updated documentation
* updated example to include new option
* updated doc
* fixed merge conflict
* correct bug in example
* reorganized function
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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Luca Fedeli
Axel Huebl
David Grote
Kevin Z. Zhu
Weiqun Zhang
Andrew Myers
NeilZaim
Michael E Rowan
