aboutsummaryrefslogtreecommitdiff
path: root/Source/Particles/PhysicalParticleContainer.cpp (unfollow)
AgeCommit message (Collapse)AuthorFilesLines
2023-07-25Clang-tidy: add cppcoreguidelines-interfaces-global-init check (#4107)Gravatar Luca Fedeli 1-0/+1
2023-07-24Fix timestep duration plot script download link (#4105)Gravatar Marco Garten 1-1/+1
Previously, this just was a relative link to the file which could not be resolved. Now it downloads the plot script.
2023-07-24Update perlmutter_gpu.sbatch (#4100)Gravatar kngott 1-1/+1
Tweak tasks per node. 32 is with hyper threads.
2023-07-24exclude some checks from clang-tidy CI test (#4108)Gravatar Luca Fedeli 1-0/+5
2023-07-24AMReX/PICSAR: Weekly Update (#4111)Gravatar Axel Huebl 6-6/+6
* AMReX: Weekly Update * PICSAR: Weekly Update
2023-07-24Merge MPI Reduction Calls (#4051)Gravatar Weiqun Zhang 5-48/+17
2023-07-21Fix `chi_min` and `chi_max` in `ParticleExtrema` reduced diags (#4101)Gravatar Arianna Formenti 1-10/+13
* moved reduce ops out of loop over boxes and added io process number * fixed position of reduce data eval * moved chi_min_f chi_max_f outside loop over levels * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-07-21Update inputs files in WarpX (#4103)Gravatar Weiqun Zhang 10-25/+25
Due to the recent changes in amrex::ParmParse, we must use the line continuation character '\' for values spanning multiple lines. For Parser expression, we could either double quotes to enclose the whole string or use `\` as line continuation. The old style multi-line values were removed in AMReX to avoid mistakes like algo.current_deposition = direct # galilean psatd.use_default_v_galilean # Forgot = 1 Here, `psatd.use_default_v_galilean` is silently ignored because with the old style multi-line support it becomes part of the values for the previous definition (i.e., `algo.current_deposition = direct psatd.use_default_v_galilean`). This case will now abort.
2023-07-20Fix: Ablastr PoissonSolver Constant (#4090)Gravatar Axel Huebl 1-1/+2
Seen in ImpactX: ``` build/_deps/fetchedablastr-src/Source/ablastr/fields/PoissonSolver.H:163:31: error: use of undeclared identifier 'PhysConst' rho[lev]->mult(-1._rt/PhysConst::ep0); // TODO: when do we "un-multiply" this? We need to document this side-effect! ^ ```
2023-07-18AMReX: Weekly Update (#4092)Gravatar Axel Huebl 5-5/+5
2023-07-18Remove specification of nsys version (#4048)Gravatar Remi Lehe 1-13/+1
2023-07-17Remove field probe raw_fields option (#4074)Gravatar David Grote 3-37/+11
* Remove field probe raw_fields option * Fix error message * Remove unused variables * Remove more unused variables
2023-07-18Release 23.07 (#4088)Gravatar Axel Huebl 11-13/+13
* AMReX: 23.07 * PICSAR: 23.07 * WarpX: 23.07
2023-07-17 Clang-tidy CI test: add some performance checks in clang-tidy CI test (#4077)Gravatar Luca Fedeli 5-9/+15
* add some performance checks in clang-tidy CI test * fix few smalle performance issues found with clang-tidy * fix bug * fixed bug * fixed performance issue
2023-07-17Update Adastra documentation (#4082)Gravatar Luca Fedeli 3-34/+213
* update Adastra documentation * fix issues in the documentation * fixed issues * fixed issue * fixed issue * replace some 'Frontier' with 'Adastra' in adastra documentation
2023-07-17 Update LUMI documentation (#4087)Gravatar Luca Fedeli 3-30/+212
* add almost all missing bugprone checks in clang-tidy CI test * disable bugprone-misplaced-widening-cast check * fix issue of type bugprone-integer-division * initial update of the documentation * update LUMI profile * updates & addition of install dependencies script * update doc * fix bug
2023-07-14ablastr: fix missing/superfluous `#include` directives (#4080)Gravatar Luca Fedeli 17-28/+33
* use iwyu on ablastr * fix bug * add missing include * always include AMReX_ParallelDescriptor in Logger.cpp
2023-07-13Add reduced diag precision input parameter (#4079)Gravatar David Grote 3-1/+11
* Add precision input parameter for reduced diags * Add documentation * Allow parsing of the precision input parameter
2023-07-13Update Intel compiler installation (#4081)Gravatar Weiqun Zhang 1-5/+8
2023-07-13Clang-tidy CI test: make bugprone checks list more compact (#4075)Gravatar Luca Fedeli 1-57/+1
2023-07-11Clang-tidy CI test: add almost all missing bugprone clang-tidy checks (#4064)Gravatar Luca Fedeli 2-1/+53
* add almost all missing bugprone checks in clang-tidy CI test * disable bugprone-misplaced-widening-cast check * fix issue of type bugprone-integer-division
2023-07-11Clang-tidy CI test: add more bugprone clang-tidy checks (#4047)Gravatar Luca Fedeli 1-0/+3
2023-07-10Clang-tidy CI test: add few bugprone clang-tidy checks (#4046)Gravatar Luca Fedeli 1-0/+4
* add few bugprone checks in clang-tidy CI * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-07-10main.cpp: change warpx_amrex_init into warpx::initialization::amrex_init (#4055)Gravatar Luca Fedeli 4-31/+41
* change warpx_amrex_init into warpx::initialization::amrex_init * fix bug
2023-07-10explicitly exclude bugprone-easily-swappable-parameters check from ↵Gravatar Luca Fedeli 1-0/+1
clang-tidy CI test (#4060)
2023-07-10Update GitHub actions CI test to use Ascent 0.9.2 (#4067)Gravatar Cyrus Harrison 1-1/+1
2023-07-10Fix `max_grid_size` for RZ PSATD (#4073)Gravatar David Grote 1-3/+4
2023-07-10Fix clang-tidy `bugprone-branch-clone` warning (#4072)Gravatar Edoardo Zoni 1-28/+18
2023-07-06Impose t_lab in Lorentz Transformation for externally loaded particles (#3996)Gravatar Ilian Kara-Mostefa 2-13/+16
* Impose t_lab from the openPMD file, set t_lab=0 by default for handwritten species * Clear commented out print statement * Move x and y coordinates accordingly
2023-06-30Docs: Karolina (IT4I) (#4012)Gravatar Axel Huebl 7-0/+635
* Docs: Karolina (IT4I) Document how to use the Karolina supercomputer at IT4I.cz * ADIOS2: w/o HDFVol Layer * Add OpenBLAS for RZ+PSATD * GPU Visibility Work-Around * Add GPU Job Script Co-authored-by: "Andrei Berceanu <andrei.berceanu@eli-np.ro>" * Typo: PBS * Activate Env On Install * uodate GPUs per node * pbs pinning Maybe not the closest CPU-GPU, but at least 1:1. * Update Modules, Job Script * [Draft] CPU: Slight Update Modules and job script are to do. * Fix: /scratch
2023-06-30Allow `FieldProbe` in RZ geometry (#4057)Gravatar Roelof Groenewald 5-15/+23
* allow `FieldProbe` in RZ geometry * hard code the FieldProbe number of outputs to 11 * add note in the docs about `raw_fields` only outputting the n=0 azimuthal mode
2023-06-30Continuous injection of moving plasma (#3958)Gravatar Edoardo Zoni 10-72/+186
* Continuous injection of moving plasma * Fix const correctness * Fix bugs in calculation of v_bulk * Fix restart * Use range-based for loops where possible * Apply suggestions from code review * Fix bug related to managed memory * Apply suggestions from code review * Exclude case with `moving_window_v = 0` * Add to WarpXParticleContainer virtual function that returns pointer to plasma injector * Add to WarpXParticleContainer member variable for current injection position * Fix bugs * Fix bug: use continue instead of return
2023-06-30Use GPU compatible kernel in `sumParticleCharge` (#3949)Gravatar Roelof Groenewald 1-7/+11
* use GPU compatible kernel in `sumParticleCharge` * Add omp threading if GPU is not used. Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov> --------- Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov>
2023-06-30Docs: update openPMD tutorials link (#4061)Gravatar Ilian Kara-Mostefa 1-1/+1
2023-06-30Allocate fewer `rho` components for ES, MS, hybrid-PIC solvers (#4036)Gravatar Remi Lehe 3-14/+18
* Allocate fewer components for `rho` * Fix compilation * Use two components with dive_cleaning * Fix Python script * Fix PICMI script for 1D CI test --------- Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
2023-06-30RigidInjection: properly transform z_inject to boosted frame (#4059)Gravatar Remi Lehe 1-1/+5
2023-06-29Fix typo in docs of hybrid PIC scheme (#4058)Gravatar Roelof Groenewald 1-1/+1
2023-06-29Clean up of MultiFab tagging (#4014)Gravatar David Grote 7-225/+233
* Clean up of MultiFab tagging * Use [level=level] for the tag
2023-06-28Replace unsed WARPX_DIM_2D with AMREX_SPACEDIM==2 (#4039)Gravatar Luca Fedeli 1-2/+2
* replace WARPX_DIM_2D, since it is not used anymore * fixed bug
2023-06-28AMReX: Weekly Update (#4053)Gravatar Axel Huebl 5-5/+5
2023-06-28remove dependency of VectorPoissonSolver.H on WarpX (#4054)Gravatar Luca Fedeli 1-6/+4
2023-06-28Doc: Link All Tests in Examples (#4056)Gravatar Axel Huebl 1-0/+7
Although we want to document them with more detail, this is the right location to link the integration tests already.
2023-06-27Kernel Fusion in Reduced Diagnostics for Fields (#4050)Gravatar Weiqun Zhang 1-84/+29
The 8 kernels in ReducedDiags/FieldMaximum is merged into one. Also, we can call one MPI Reduce on all 8 numbers.
2023-06-27Define new `InjectorFlux` object, and use it in `AddPlasmaFlux` (#4040)Gravatar Remi Lehe 8-23/+227
* Create flux injector object * Call new flux injector in AddPlasmaFlux * Update syntax in tests * Also test the flux parser * Remove the use of `density_min` and `density_max` for flux injection * Update PICMI interface * Update documentation * Remove .cpp file
2023-06-27Doc: Summit SciPy -j10 (#4045)Gravatar Axel Huebl 1-1/+1
We can use the latest SciPy if we avoid over-using the provided resources on the head-node. Compile with `-j 10` instead of `-j` now.
2023-06-27Adding current density to Field Reduction reduced diagnostic (#3980)Gravatar Lizzette Corrales 6-12/+64
* Adding j in FieldReduction * Modiyfying input file with FieldReduced diag * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update Source/Diagnostics/ReducedDiags/FieldReduction.H * updating Field Reduction Docs to include current density * Update Source/Diagnostics/ReducedDiags/FieldReduction.H Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * adding cuurent density BackwardCompatibility to Field Reduction diagnostic * including E dot j density using the modifyed Field Reduction * fixing picmi interface * adding Edotj to automated python test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: Lizzette Corrales <lzcorrales@kong.dhcp.lbl.gov> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com>
2023-06-27Clang-tidy CI test: add bugprone-branch-clone check (#4030)Gravatar Luca Fedeli 8-80/+94
* add bugprone-branch-clone to clang-tidy CI test * Updating Inline Comments Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2023-06-27refactored `HybridPICModel::HybridPICSolveE` to more readable (#4044)Gravatar Roelof Groenewald 5-57/+33
2023-06-27Doc: Summit Scipy Install (#4023)Gravatar Ryan Sandberg 1-11/+13
* fix some build issues * downgrade scipy version to what can install on Summit * make sure to remove tmp build dir * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update * Cleaning --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2023-06-26Remove Custom momentum and density injector (#4037)Gravatar Remi Lehe 9-158/+7
generated by cgit v1.2.3 (git 2.46.0) at 2025-08-13 22:27:42 +0000