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2023-01-06Docs: Perlmutter (NERSC) Module Update (#3599)Gravatar Axel Huebl 1-3/+3
Update modules after the last upgrade of Perlmutter (NERSC).
2023-01-06For the tridiag, remove the guard cells since they are not needed (#3604)Gravatar David Grote 1-45/+30
* Removed the guard cells since they are not needed for the tridiag * Clean up the copy into the 1d array * For the upper boundary, use explicit indices instead of temporaries to make the code more clear
2023-01-04Generalize interpolation routines in diags for anisotropic ref ratio (#3603)Gravatar Prabhat Kumar 4-15/+17
* Correct particle positions outside refined injection * Improve test * Update benchmark * Modifications for vector refinement ratio * Update getPosition function * Update code for anisotropic injection * Correct compilation * Correct code for RZ and 1D * Correct indentation * Correct integer overflow, as suggested by Weiqun * Generalize interpolation routines in diagnostics for anisotropic ref ratio * Update Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/Utils/Interpolate.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/Utils/Interpolate.cpp Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/Utils/Interpolate_K.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update Source/Utils/Interpolate.H Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * apply review suggestion Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2023-01-04Refined injection with anisotropic mesh refinement ratio (#3464)Gravatar Remi Lehe 2-21/+31
* Correct particle positions outside refined injection * Improve test * Update benchmark * Modifications for vector refinement ratio * Update getPosition function * Update code for anisotropic injection * Correct compilation * Correct code for RZ and 1D * Correct indentation * Correct integer overflow, as suggested by Weiqun
2023-01-04Fix bug for intra-species Coulomb collisions (#3526)Gravatar Yinjian Zhao 7-8/+179
* Correct density * update * Add test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update Regression/WarpX-tests.ini * update * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Apply suggestions from code review * update * Fix shadowing of variables * Simplify code * Correct density * Update checksum * Update exponential fit * Remove unused global variable * Add comment on exponential fit * Cleaning * Cleaning * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> Co-authored-by: Edoardo Zoni <ezoni@lbl.gov> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2023-01-03Release 23.01 (#3598)Gravatar Axel Huebl 12-14/+14
* AMReX: 23.01 * PICSAR: 23.01 * WarpX: 23.01
2023-01-02fix two issues with unchecked possibly null pointer found with CodeQL (#3582)Gravatar Luca Fedeli 1-4/+5
2023-01-02Docs: Fix some typos (#3593)Gravatar Phil Miller 3-5/+5
* Fix typos noticed in reviewing existing changes * Fix a typo in test case name * Plasma Lens: Rename Benchmark Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2023-01-02[pre-commit.ci] pre-commit autoupdate (#3594)Gravatar pre-commit-ci[bot] 1-1/+1
updates: - [github.com/pycqa/isort: v5.11.3 → 5.11.4](https://github.com/pycqa/isort/compare/v5.11.3...5.11.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-01-02Fix a Bug in 1D ES (#3597)Gravatar Weiqun Zhang 1-4/+3
After the tri-diagonal solve, the data in the special single-box MultiFab need to be copied back to the normal MultiFab. However, when there was a bug for periodic boundary. The issue is the special MultiFab is really special. It has a nodal Box that grows the original nodal Box by 1 node in the lower boundary and 2 (why 2?) nodes in the upper boundary and these grown nodes are considered valid nodes, even though they do not have valid data. Therefore amrex::ParallelCopy with periodicity does not work in this case. For example, for a domain with 96 cells, the data at nodes 1 and 2 of the normal MultiFab could be written with the invalid data at nodes 97 and 98 of the special MultiFab. This bug is fixed by replacing it with a ParallelCopy without periodicity followed by a FillBoundary.
2022-12-22Update AMReX (GCC 7.5 & Ascent) (#3592)Gravatar Axel Huebl 5-5/+5
2022-12-22Feature magnetostatic solver (#3551)Gravatar S. Eric Clark 31-20/+1746
* Initial working Magnetostatic solver integration into warpx. Includes hooks in Python library, and a test problem. Build files updates. New solver algorithm and inputs. * Fixed indexing to allow Magnetostatic solver to work in RZ and 3D. * Removing trailing whitespace. * Adding basic regression testing with benchmarks. * Updated Regression test ini * Augmented test scripts to compare to analytical results for uniform beam. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Updating CI tests for magnetostatic solver. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Updated magnetostatic CI tests to pass locally in regression testing framework. * Adjusting tolerance on magnetostatic_rz regression test to allow for noise in near zero fields. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Converted particle layout to Gridded instead of PsedupRandom to improve reproducibility of particle deposition for regression testing. * Dropped benchmark field comparisons with fields near zero. Dropped particle benchmark for magnetostatic_eb_rz regression test due to randomized particle theta adding noise to fields after a timestep. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Found and fixed a bug in syncronization of MultiFabs when interpolating between grids in the magnetostatic solver. Added Python output for nodal current and vector potential. Updated the CI tests to disable dynamic scheduling and enbale serialization of initial conditions. Updated benchmarks fro tests. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update Source/FieldSolver/MagnetostaticSolver/MagnetostaticSolver.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Source/FieldSolver/MagnetostaticSolver/MagnetostaticSolver.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Adding random_theta flag to PICMI interface and updating RZ CI test and benchmark with change to disable randomized theta. * Added documentation to parameters.rst for relativistic-magnetostatic flag. Documentation corrections. Removal of commented source. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Removing need to use do_current_centering. Updated current density inverse scaling support for nodal Jr in radius. Added flag to check for m_rz_random_theta when laying down particles in RZ. * Remove dA/dt term to decouple electrostatic and magnetostatic solvers. * Remove update of auxiliary fields * Adding non-Python test case for magnetostatic solver. Updating benchmarks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update Source/FieldSolver/MagnetostaticSolver/MagnetostaticSolver.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Python/pywarpx/_libwarpx.py Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Python/pywarpx/_libwarpx.py Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Python/pywarpx/_libwarpx.py Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Python/pywarpx/_libwarpx.py Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Source/Diagnostics/Diagnostics.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Source/Evolve/WarpXEvolve.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Update Source/FieldSolver/MagnetostaticSolver/MagnetostaticSolver.H Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Refactor names of functions for magnetostatic solver implementation. Remove current_fp_nodal python interface. Drop extraneous ghost cell exchanges. * Adding radial weighting at r=0 for Jr if nodal. * Splitting off Amrex bucket and adjustments to RZ radial weighting into different branches to be merged. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update Source/FieldSolver/MagnetostaticSolver/MagnetostaticSolver.cpp Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> * Switch name to labfame-electromagnetostatic * Update example scripts Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2022-12-22AMReX/PICSAR: Weekly Update (#3578)Gravatar Axel Huebl 6-7/+8
* AMReX: Weekly Update * Fix Intel CI: dpcpp -> icpx Intel has deprecated `dpcpp`. We are supposed to use `icpx -fsycl` now for SYCL code. * Add -fsycl Co-authored-by: Weiqun Zhang <weiqunzhang@lbl.gov>
2022-12-22CMake: ADIOS1 off by default (#3591)Gravatar Axel Huebl 1-0/+1
We will deprecate ADIOS1 and will not build it by default anymore in the upcoming release. Since we only use ADIOS2 in WarpX and builds are sometimes fragile with ADIOS1, we just disable it now in superbuilds already.
2022-12-22Adding radial weighting at r=0 for Jr if nodal. (#3589)Gravatar S. Eric Clark 1-17/+22
2022-12-21Avoid touching device memory on host in FieldProbe (#3579)Gravatar Weiqun Zhang 1-16/+23
The implementation here can be optimized by using shared memory. However, instead of doing it here, I am going to add a helper function to AMReX. Also removed an unnecessary synchronization, because there is a synchronization in the destructor of the particle iterator.
2022-12-21CI: Unbreak macOS Python3 (#3587)Gravatar Axel Huebl 1-1/+1
2022-12-21Allow const_dt with EM and check it for ES (#3561)Gravatar David Grote 5-5/+14
* Allow const_dt with EM and check it for ES * Update PR according to comments * Fix typo * Fix invalid reference to m_const_dt * Fixed another invalid reference to m_const_dt * Remove erroneous setting of `const_dt` test * Add doc for const_dt Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
2022-12-21Include fusion reactions in documentation (#3570)Gravatar Remi Lehe 1-16/+51
* Include fusion reactions in documentation * Finalize documentation * Update documentation * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2022-12-21Docs: Fix HTML5 for Install Logos (#3588)Gravatar Axel Huebl 1-1/+1
With the update tot HTML5 in docutils, we need to modernize our CSS code that does fancy logos in the user install section.
2022-12-21Add accelerator lattice, starting with quadrupoles (#3063)Gravatar David Grote 40-7/+1856
* Initial version of accelerator lattice * Clean up EOL white space * Small clean up for GPU * Fixed up consts * Added hard edge fraction plus other clean ups * More clean up * Restructure to work on GPUs * Now this grabs its own copies of particle info * Updates, including adding dBdx * Small cleanup in Quad * Small fixes for GPU * More cleanup for GPU * More GPU cleanup * Rewrite of the accelerator lattice implementation to better handle GPU * Fix struct forward definition * Another forward definition fix * Bug fix * Added LatticeElementBase * Removed zcenters array * Added CI test case * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Clean up in CI analysis.py * Cleanup of coding * Added CI test hard_edged_quadrupoles_moving * Added Lorentz transform between boosted frame and lab frame * Fixes for working in the boosted frame * Added boosted CI test * Change input name, adding the prefix "lattice." * Added plasma lens lattice element This will replace the external field plasma lens * Fixed CI analysis script to look for "lattice.quad" * Added checks of lattice element input * Added documentation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Removed duplicate call to lattice finder UpdateIndices * Added extensive comments * Reworked the input to use the MAD like description This is the same as the method used in ImpactX * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Remove old lines from inputs_lattice_3d * Added "lattice" element type * Fixed some Real and ParticleReals * [pre-commit.ci] pre-commit autoupdate (#3246) updates: - [github.com/hadialqattan/pycln: v2.0.1 → v2.0.3](https://github.com/hadialqattan/pycln/compare/v2.0.1...v2.0.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * ABLASTR: Update Poisson Solver API (#3243) Update the Poisson Solver API to be more usable. Needed for ImpactX. * Docs: New OLCF Machine (#3228) * D-T fusion (#3153) * initial work * fixed bugs and added species * update documentation * delete unused file * Add properties for neutron, hydrogen isotopes, helium isotopes * Update code to be more consistent * Correct typo * Parse deuterium-tritium fusion * Start putting in place the files for deuterium-tritium * Update documentation * Prepare structures for deuterium tritium * Fix typo * Fix compilation * Add neutron * Add correct formula for the cross-section * Correct compilation error * Fix nuclear fusion * Reset benchmarks * Prepare creation functor for 2-product fusion * First implementation of momentum initialization * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Use utility function for fusion * Minor modification of variable names * Fix GPU compilation * Fix single precision compilation * Update types * Use util function in P-B fusion * Correct compilation errors * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Correct errors * Update values of mass and charge * Correct compilation error * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Correct compilation error * Correct compilation error * Correct compilation error * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Reset benchmark * Use helium particle in proton-boron, to avoid resetting benchmark * Fixed proton-boron test * Revert "Fixed proton-boron test" This reverts commit 73c8d9d0be8417d5cd08a23daeebbc322c984808. * Incorporate Neil's recommendations * Reset benchmarks * Correct compilation errors * Add new deuterium tritium automated test * Correct formula of cross-section * Correct cross-section * Improve analysis script * Add test of energy conservation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add test of conservation of momentum * Progress in analysis script * Fix error in the initial energy of the deuterium particles * Add check of isotropy * Clean up the test script * Rewrite p_sq formula in a way to avoids machine-precision negative numbers * Add checksum * Clean up code * Apply suggestions from code review * Update PR according to comments * Update benchmark * Address additional comments * Numerical Literals Co-authored-by: Luca Fedeli <luca.fedeli@cea.fr> Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Docs: gaussian beam `q_tot` is not optional (#3249) * Fix a bug in GPU version of Hankel Transform (#3253) amrex::Array4 is a 4D array that can be accessed with three spatial indices plus an optional component index. We must always provide all three spatial indices even in 2D. * Add Python Callback Call when Checkpointing Signal is Received (#3251) * CI: Add Missing Regression Analysis (NCI corrector) (#3252) * Fixes to allow mixed precision, ParticleReal float, Real double (#3239) * Fixes to allow mixed precision, ParticleReal float, Real double * Fix for the optical depth * A different way of fixing QuantumSynchrotronEvolveOpticalDepth * In the QED code, consistently use ParticleReal * Use ParticleReal type consistently * Fix typo Docs/source/usage/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Fix typo Docs/source/usage/parameters.rst Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Fix small error in plasma lens lattice documentation * Small addition to the documentation * Fix the residence correction to allow short elements * Updated CI benchmarks * Added check of lattice to isNoOp * Updated the hard_edged_quadrupoles CI benchmarks It is not clear why there was a change, but the difference is essentially round off in the E field. The important thing is that the particles are still correct. * Update Source/AcceleratorLattice/AcceleratorLattice.H Add include statements Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/AcceleratorLattice/LatticeElements/LatticeElementBase.H Add includes Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Renamed to README.rst and updated headers * Made d_lattice_element_finder optional type * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Include `<optional>` * Docs: Developer AccLattice Inclusion Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> Co-authored-by: Luca Fedeli <luca.fedeli@cea.fr> Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: Weiqun Zhang <WeiqunZhang@lbl.gov> Co-authored-by: Roelof Groenewald <40245517+roelof-groenewald@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2022-12-20[pre-commit.ci] pre-commit autoupdate (#3580)Gravatar pre-commit-ci[bot] 1-1/+1
updates: - [github.com/pycqa/isort: 5.11.1 → v5.11.3](https://github.com/pycqa/isort/compare/5.11.1...v5.11.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-12-20Fix typo in documentation for Haswell (#3583)Gravatar Remi Lehe 1-1/+1
2022-12-19managed memory for user defined attribs in addplasma (#3576)Gravatar Revathi Jambunathan 1-25/+66
2022-12-19Docs: Profiler Sync (Debug) (#3571)Gravatar Axel Huebl 1-0/+4
Document the `amrex.use_profiler_syncs` option in our debugging section.
2022-12-19Clean up documentation (#3542)Gravatar David Grote 31-92/+100
* Fix comments for documentation * More fixes to comments for documentation * Fixes in the doc files * Fix typo in parameters.rst
2022-12-19Docs: rst Formatting Issue in GB PaperGravatar Axel Huebl 1-6/+6
2022-12-16Add a new section on domain decomposition to the docs. (#3572)Gravatar Andrew Myers 5-90/+86
* Add a new section on domain decomposition to the docs. * Remove old parallelization section and migrate more info
2022-12-16Docs: add ``photo_species`` input param and fix typo (#3575)Gravatar Arianna Formenti 1-1/+5
* Docs: add photo_species input param and fix typo This PR makes the following changes to the _Input Parameters_ page of the documentation: - Adds the input parameter ``particles.photon_species`` to the Particle Initialization section. - Fixes a typo in the section _Lookup tables and other settings for QED modules_ under the bullet point about ``qed_qs.lookup_table_mode`` (from ``qed_bw.save_table_in`` to ``qed_qs.save_table_in``) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-12-15Refactor update of auxiliary data for electrostatic solver (#3573)Gravatar Remi Lehe 2-10/+4
* Refactor update of auxiliary data for electrostatic solver * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-12-15Allow surface flux injection from the domain boundary (#3554)Gravatar David Grote 6-18/+59
* Fix to AddPlasmaFlux to allow flux surface to be on the domain boundary * Update FluxInjection3D.json since the particle positions changed * Update comments in AddPlasmaFlux
2022-12-13Fix Syntax in .zenodo.jsonGravatar Axel Huebl 1-0/+1
follow-up to last commit updating contributors
2022-12-13Typo: Fewer Ranks (Perf. Hint) (#3569)Gravatar Axel Huebl 1-2/+2
* Typo: Fewer Ranks (Perf. Hint) * fix warning message (space) Co-authored-by: lucafedeli88 <luca.fedeli@cea.fr>
2022-12-13Release 22.12 (#3565)Gravatar Axel Huebl 11-14/+14
* AMReX: 22.12 * PICSAR: 22.12 * WarpX: 22.12
2022-12-12CodeQL Filter: One Level DeeperGravatar Axel Huebl 1-0/+1
2022-12-12CI CodeQL: Filter Third Party (#3563)Gravatar Axel Huebl 2-0/+27
Filter out third party warnings, i.e., from AMReX, PICSAR, and openPMD.
2022-12-13[pre-commit.ci] pre-commit autoupdate (#3564)Gravatar pre-commit-ci[bot] 1-1/+1
updates: - [github.com/pycqa/isort: 5.10.1 → 5.11.1](https://github.com/pycqa/isort/compare/5.10.1...5.11.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-12-13Update documentation to compile and run on LUMI supercomputer (#3562)Gravatar Luca Fedeli 3-8/+57
* update example profile * update documentation for LUMI * Fix minor typo Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2022-12-09CI: CodeQL w/ 🔍Gravatar Axel Huebl 1-1/+1
2022-12-09Improve memory footprint for ParticleInitialize (#3392)Gravatar Revathi Jambunathan 5-38/+59
2022-12-09CI: Source Checks on ubuntu 22.04 (#3558)Gravatar Axel Huebl 1-1/+1
Updated Doxygen from 1.8.17 to 1.9.1
2022-12-09Renamed currents in Vay deposition from `j` to `D` (#3557)Gravatar Arianna Formenti 2-35/+36
* Renamed Vay currents from j to D * [pre-commit.ci] auto fixes from pre-commit.com hooks
2022-12-08CI: Concurrency Limit CodeQLGravatar Axel Huebl 1-0/+4
Same as other runners: aborts when new updates are pushed to safe CI time.
2022-12-08Add CodeQL workflow for GitHub code scanning (#3555)Gravatar lgtm-com[bot] 2-29/+63
* Add CodeQL workflow for GitHub code scanning * Remove: old LGTM config * Fix: CodeQL Deps Co-authored-by: LGTM Migrator <lgtm-migrator@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2022-12-08Docs: Repo Vis Link (#3553)Gravatar Axel Huebl 1-1/+1
2022-12-08ABLASTR: Coarsen Functions (#3433)Gravatar Axel Huebl 32-546/+640
* ABLASTR: Coarsen Functions Move coarsen functions to ABLASTR. Rename by property of the coarsening function. * Remove unused imports Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
2022-12-08Highlights & References: Gordon Bell (#3552)Gravatar Axel Huebl 4-5/+25
* Highlights & References: Gordon-Bell Add our award-winning Gordon Bell paper in documentation :) * Update Landing Pages
2022-12-07PSATD: Implement First-Order Equations (#3466)Gravatar Edoardo Zoni 37-292/+957
* Implement First-Order PSATD Equations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix Unused Parameter Warning * Fix RZ Build * Fix Normalization of G to Match PML * Add CI Test: 3D Uniform Plasma * Cleaning * Update 2D CI Checksums * Update 3D CI Checksums * Add F,G to CI Checksums of `uniform_plasma_multiJ` * Allow User to Choose First-Order v. Second-Order * Add WARPX_ALWAYS_ASSERT_WITH_MESSAGE * Rename New Class `PsatdAlgorithmFirstOrder` * Remove Inline Comment * Update RZ CI Checksums * Fix inline comment * Use auxiliary variables to avoid divisions * Use auxiliary variables to avoid divisions * Make `nci_psatd_stability` dir and merge inputs * Move all Galilean tests to `nci_psatd_stability` * Fix CI * Fix index for backward FFT of J Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-12-06Zenodo: Move Gunther to ContributorsGravatar Axel Huebl 1-5/+5
2022-12-07Fix the CUDA Aware part of the Perlmutter script. (#3549)Gravatar kngott 1-1/+1
As a Gordon Bell winner, I take no responsibility for this bug. But, I'll fix it. And it gives solid performance enhancement, so I will take responsibility for that. 😄