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* merge
* wip
* namespace
* eol
* cost
* eol
* fix
* eol
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* Docs: PSATD Runtime Option
* Tests: PSATD Runtime Option
Add new runtime option to PSATD regression test matrix.
* PICMI: PSATD runtime option
* Source: PSATD Runtime Option
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* Implemented lab frame electrostatic model
* Small clean up of ComputeSpaceChargeField
* Added ElectrostaticSphereLabFrame regression test
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* Rename Input to `algo.maxwell_solver`
Rename the input option `algo.maxwell_fdtd_solver` to
`algo.maxwell_solver` and throw a useful error message for users
using the old option.
This is in preparation to unify FDTD and PSATD input control to
reduce mutually exclusive binary variants of WarpX.
* MW Solver Name: Update Examples
Update all example to use the new algo.maxwell_solver option.
* Fix typo in comutation of dt
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* Added stub for current correction in RZ spectral solver
* Start implementation of Vay deposition
* Continue implementation of Vay deposition
* Correct deposition of D
* Add phase shift for staggered currents
* Small clean-up
* Fix units in deposition of D
* Implement average of cumulative sum (needs bug fix)
* Start fixing bug in average of cumulative sum
* Still debugging
* Cumulative sums should be correct now
* Subtract averages of cumulative sums:
- current implementation: cumulative sums, inverse Fourier transform, subtraction of averages
- needs to be tested (including units of D after Vay deposition)
- needs to be shortened (too many loops over boxes and ParallelFors)
* [skip CI] Clean up and fix units
* Still fixing units
* [skip CI] Remove temporarily averages of cumulative sums
* [skip CI] Remove distinction between staggered and nodal
* Vay and Esirkepov similar results on periodic single box:
TODO:
- debug (charge not conserved);
- try using compute_shifted_shape_factor as in Esirkepov deposition;
- clean up;
- try on multiple boxes and with correction of mode at 0 frequency.
* [skip CI] Clean up
* Fix bug in 3D deposition
* [skip CI] Clean up
* Fix 2D and 3D implementation:
- simulation results agree between direct and Vay deposition in both 2D and 3D
- Travis CI tests should pass except for check of charge conservation (debug)
* Small clean-up
* Fix bug when compiling in RZ geometry
* Add benchmark json files (will be reset later)
* Do not set zero current at zero frequency
* [skip CI] Revert last commit and clean up
* Fix small bug after reverting commit
* Set nodal test first on Travis
* Fix benchmark for nodal test in 3D
* Fix particle output for nodal test in 3D
* Fix bugs due to staggering
* Rename current nodal Travis tests
* Add Travis tests staggered in 2D and 3D
* Further clean-up after bug fix
* Abort when using Vay deposition with domain decomposition
* Add optional argument of index type to forward FFT
* Fourier shifts can be private members as before
* Small clean-up
* Clean up and improve Doxygen documentation
* Fix small bug in analysis script for 2D tests
* Fix tests (remove E and B fields from particle diags)
* Add option to fill guard cells and docs
* Fix value of last guard cell by enforcing periodicity
* Revert changes merged from #1121
* Clean up style
* Improve docs
* Fix forgotten alignment
* Improve docs
* Make base class functions VayDeposition pure
Co-authored-by: Dave Grote <dpgrote@lbl.gov>
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* Adding macro-E Push and new file
* Add macroEvolveE, call it, and include algo selection in utils
* fix eol
* Fixing bug in macroE for sigma method 1
* changing MacroEvolveE to MacroscopicEvolveE
* add class for macroscopicproperties and an object in WarpX class
* fix eol
* adding templated ckc call with comment that EvolveE is same for yee and ckc
* add header file pointing to ckc algorithm
* adding obejct m_macroscopic_properties to access sigma,eps,mu
* some cleaning
* Adding comments
* adding documentation
* spelling wandroff to wendroff
* fixing eol
* eol
* const in the right place. Thanks bot!
* profiler for macroscopic evolveE
* re-introduced deleted line when fixing conflict to declare templated EvolveBPMLCartesian function
* fixing if-else statement for RZ in MAcroscopicEvolveE.cpp
* adding suggestions and corrections made in PR review.
* fixing grammar in docs
* fix eol whitespace
* fix typo
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* Issue #713: Load Balance w.r.t. number of cells + particles
README: Update Badged to `master` (#725)
* README: Update Badged to `master`
Update the badges to check the `master` branch as development branch.
* Docs: More dev->master updates
- release workflow
- contribution guide link
Galilean PSATD with shift (#704)
* Read Galilean velocity
* Prepare structures for Galilean solver
* Started implementing Galilean equations
* Analytical limits for X1, X2, X3, X4 coefficients added
* Slight changes added
* Added Galilean position pusher
* Scale galilean velocity
* Remove unneeded Abort
* Fix Galilean pusher
* Allocate Theta2 array
* Fix definition of coefficients
* Increase guard cells for Galilean
* Add guard cell in particle exchange
* Type corrected
* v_gal added to warpx_current_deposition
* v_gal added to WarpXParticleContainer.H
* Bug fixed - update particle x-position over one time step
* Fix issues with merge from dev
* Preparation for merging dev into galilean.
* Adding galilean shift
* Implemented galilean shift
* Changed method's name from GalileanShift to ShiftGalileanBoundary
* Added doxygen string for ShiftGalileanBoundary
* Removed never used method LowerCornerWithCentering
* Removed temporary comments
* Removed dt as a variable from DepositCharge method and its dependencies
* Converted tab to spaces
* Removed EOL white space
* Add documentation and automated tests
* Fix compilation error
* Add automated test
* Update automated test
* Removed temporary used galilean shift
* Removed temporary used particle's push for Galilean PSATD
* Removed unused statement
* Remove EOL white space.
* Added zero shift for LowerCorner in RZ geometry
* Minor changes to Galilean implementation
* Modifications for GPU
* Fix typo
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
[mini-PR] when a cufft error occurs, print a meaningful error message (#728)
* added method to translate cufft errors
* fixed style
* bug fixing
avoid duplicate tests and plot less often (#726)
* avoid duplicate tests and plot less often
* fix tests I broke when trying to save plotfiles
doc install yt on Summit (#729)
* doc install yt on Summit
* eol
Do not use local Redistribute for electrostatic solver (#731)
Add Reset Random Seed Feature (#717)
* Add ResetRandomSeed
* Add doc
* Modify and change location of the code.
* Small fix
* Try to fix an alert
* Try to fix an alert
* Modify based on suggestions
* Use INT_MAX
* Modify based on suggestions.
* Modify based on suggestions.
openPMD: warn if step is already written (#718)
* making sure iterations are written at most once.
* prints a warning when iteration is written more than once
writting is not stopped
* Fixed tabs
* included <iostream> as requested by Axel
Minor refactoring of space-charge calculation (#732)
Improve clarity and documentation
Minor
Update GNUmakefile
Update based on comments
Update GNU Makefile
Formatting
Formatting
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Remove unneeded function
Removed unneeded function
Formatting
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Whitespace
Minor
Formatting
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whitespace
Formatting
Minor
Formatting
Remove unneeded template function
Change import
Minor
Formatting
Remove unused variable
Formatting
Update Source/WarpX.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Update Source/Parallelization/WarpXRegrid.cpp
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Remove `n_particles` and `n_cells`
Update Source/WarpX.H
Co-Authored-By: MaxThevenet <mthevenet@lbl.gov>
Revert clear costs in case of edge case
Update to use new load_balance_api in AMReX
Tabs
Minor
* minor: indentation in Source/WarpX.H
Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
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- Use `""` for WarpX-local includes
- Order: WarpX `""`, AMReX `<>`, other third party includes `<>`
- Add dir prefixes for WarpX
Add order to includes by including from `Source/` onward and keeping
directory prefixes of non-local includes for clarity.
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A typical include order in C++ is:
- "module header" (local header)
- "own headers" (WarpX)
- <close library headers> (AMReX)
- <other third party headers> (e.g. omp)
- <stdlib headers>
This avoids that a "forgotten include" will silently compile
in some compilers and crash in others (because it will crash
in all).
References:
- https://llvm.org/docs/CodingStandards.html#include-style
- https://include-what-you-use.org
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Michael E Rowan
Axel Huebl
David Grote
Edoardo Zoni
Revathi Jambunathan
Tools
Remi Lehe
Weiqun Zhang
Yin-YinjianZhao
