Clean up input files in /Examples/Physics_applications/:

- add strings '2d' or '3d' for dimensionality of test case
- use '.' only to separate file names from file extensions
- use uniform file extension '.rt' in all input files
- change wrong permissions from executable to read/write
- update entries in /Regression/WarpX-tests.ini for Travis CI

1 files changed, 130 insertions, 0 deletions

diff --git a/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost.rt b/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost.rt
new file mode 100644
index 000000000..8010c98d6
--- /dev/null
+++ b/Examples/Physics_applications/plasma_acceleration/inputs_2d_boost.rt
@@ -0,0 +1,130 @@
+#################################
+####### GENERAL PARAMETERS ######
+#################################
+max_step = 2500
+amr.n_cell = 64 640
+amr.max_grid_size = 128
+amr.blocking_factor = 32
+amr.max_level = 0
+amr.plot_file = "plotfiles/plt"
+amr.plot_int = 500
+geometry.coord_sys   = 0                  # 0: Cartesian
+geometry.is_periodic = 0 0      # Is periodic?
+geometry.prob_lo     = -125.e-6 -149.e-6
+geometry.prob_hi     =  125.e-6    1.e-6
+
+#################################
+############ NUMERICS ###########
+#################################
+algo.maxwell_fdtd_solver = ckc
+warpx.verbose = 1
+warpx.plot_raw_fields = 0
+warpx.do_dive_cleaning = 0
+warpx.use_filter = 1
+warpx.do_pml = 1
+warpx.pml_ncell = 10
+warpx.cfl = .99
+warpx.do_moving_window = 1
+warpx.moving_window_dir = z
+warpx.moving_window_v = 1. # in units of the speed of light
+my_constants.lramp = 8.e-3
+my_constants.pi    = 3.141592653589793
+my_constants.dens  = 1e+23
+interpolation.nox = 3
+interpolation.noy = 3
+interpolation.noz = 3
+
+#################################
+######### BOOSTED FRAME #########
+#################################
+warpx.gamma_boost = 10.0
+warpx.boost_direction = z
+warpx.do_back_transformed_diagnostics = 1
+warpx.num_snapshots_lab = 22
+warpx.dt_snapshots_lab = 3.335640951981521e-11
+
+#################################
+############ PLASMA #############
+#################################
+particles.nspecies = 4
+particles.species_names = driver plasma_e plasma_p beam
+particles.use_fdtd_nci_corr = 1
+particles.rigid_injected_species = driver beam
+
+driver.charge = -q_e
+driver.mass = m_e
+driver.injection_style = "gaussian_beam"
+driver.x_rms = 2.e-6
+driver.y_rms = 2.e-6
+driver.z_rms = 4.e-6
+driver.x_m = 0.
+driver.y_m = 0.
+driver.z_m = -20.e-6
+driver.npart = 1000
+driver.q_tot = -3.e-11
+driver.momentum_distribution_type = "gaussian"
+driver.ux_m = 0.0
+driver.uy_m = 0.0
+driver.uz_m = 200000.
+driver.ux_th = 2.
+driver.uy_th = 2.
+driver.uz_th = 20000.
+driver.zinject_plane = 0.
+driver.rigid_advance = true
+driver.projected = true
+driver.focused = false
+
+plasma_e.charge = -q_e
+plasma_e.mass = m_e
+plasma_e.injection_style = "NUniformPerCell"
+plasma_e.zmin = 0.e-6
+plasma_e.zmax = 0.2
+plasma_e.xmin = -70.e-6
+plasma_e.xmax =  70.e-6
+plasma_e.profile = parse_density_function
+plasma_e.density_function(x,y,z) = "(z<lramp)*0.5*(1-cos(pi*z/lramp))*dens+(z>lramp)*dens"
+plasma_e.num_particles_per_cell_each_dim = 1 1
+plasma_e.momentum_distribution_type = "constant"
+plasma_e.ux = 0.0
+plasma_e.uy = 0.0
+plasma_e.uz = 0.0
+plasma_e.do_continuous_injection = 1
+
+plasma_p.charge = q_e
+plasma_p.mass = m_p
+plasma_p.injection_style = "NUniformPerCell"
+plasma_p.zmin = 0.e-6
+plasma_p.zmax = 0.2
+plasma_p.profile = parse_density_function
+plasma_p.density_function(x,y,z) = "(z<lramp)*0.5*(1-cos(pi*z/lramp))*dens+(z>lramp)*dens"
+plasma_p.xmin = -70.e-6
+plasma_p.xmax =  70.e-6
+plasma_p.num_particles_per_cell_each_dim = 1 1
+plasma_p.momentum_distribution_type = "constant"
+plasma_p.ux = 0.0
+plasma_p.uy = 0.0
+plasma_p.uz = 0.0
+plasma_p.do_continuous_injection = 1
+
+beam.charge = -q_e
+beam.mass = m_e
+beam.injection_style = "gaussian_beam"
+beam.x_rms = .5e-6
+beam.y_rms = .5e-6
+beam.z_rms = 1.e-6
+beam.x_m = 0.
+beam.y_m = 0.
+beam.z_m = -105.e-6
+beam.npart = 1000
+beam.q_tot = -3.e-13
+beam.momentum_distribution_type = "gaussian"
+beam.ux_m = 0.0
+beam.uy_m = 0.0
+beam.uz_m = 2000.
+beam.ux_th = 2.
+beam.uy_th = 2.
+beam.uz_th = 200.
+beam.zinject_plane = 0.
+beam.rigid_advance = true
+beam.projected = true
+beam.focused = false