Merge remote-tracking branch 'upstream/dev' into estatic

1 files changed, 148 insertions, 3 deletions

diff --git a/Python/pywarpx/fields.py b/Python/pywarpx/fields.py
index fa247db07..920c109d6 100644
--- a/Python/pywarpx/fields.py
+++ b/Python/pywarpx/fields.py
@@ -87,14 +87,28 @@ class _MultiFABWrapper(object):
     def _getitem3d(self, index):
         """Returns slices of a 3D decomposed array,
         """
-        ix = index[0]
-        iy = index[1]
-        iz = index[2]
 
         lovects = self._getlovects()
         hivects = self._gethivects()
         fields = self._getfields()
 
+        ix = index[0]
+        iy = index[1]
+        iz = index[2]
+
+        if len(fields[0].shape) > self.dim:
+            ncomps = fields[0].shape[-1]
+        else:
+            ncomps = 1
+
+        if len(index) > self.dim:
+            if ncomps > 1:
+                ic = index[-1]
+            else:
+                raise Exception('Too many indices given')
+        else:
+            ic = None
+
         nx = hivects[0,:].max() - self.nghosts
         ny = hivects[1,:].max() - self.nghosts
         nz = hivects[2,:].max() - self.nghosts
@@ -124,9 +138,12 @@ class _MultiFABWrapper(object):
             izstop = iz + 1
 
         # --- Setup the size of the array to be returned and create it.
+        # --- Space is added for multiple components if needed.
         sss = (max(0, ixstop - ixstart),
                max(0, iystop - iystart),
                max(0, izstop - izstart))
+        if ncomps > 1 and ic is None:
+            sss = tuple(list(sss) + [ncomps])
         resultglobal = np.zeros(sss, dtype=_libwarpx._numpy_real_dtype)
 
         datalist = []
@@ -145,6 +162,8 @@ class _MultiFABWrapper(object):
                 sss = (slice(ix1 - lovects[0,i], ix2 - lovects[0,i]),
                        slice(iy1 - lovects[1,i], iy2 - lovects[1,i]),
                        slice(iz1 - lovects[2,i], iz2 - lovects[2,i]))
+                if ic is not None:
+                    sss = tuple(list(sss) + [ic])
 
                 vslice = (slice(ix1 - ixstart, ix2 - ixstart),
                           slice(iy1 - iystart, iy2 - iystart),
@@ -295,6 +314,14 @@ class _MultiFABWrapper(object):
         hivects = self._gethivects()
         fields = self._getfields()
 
+        if len(index) > self.dim:
+            if ncomps > 1:
+                ic = index[-1]
+            else:
+                raise Exception('Too many indices given')
+        else:
+            ic = None
+
         nx = hivects[0,:].max() - self.nghosts
         ny = hivects[1,:].max() - self.nghosts
         nz = hivects[2,:].max() - self.nghosts
@@ -343,6 +370,8 @@ class _MultiFABWrapper(object):
                 sss = (slice(ix1 - lovects[0,i], ix2 - lovects[0,i]),
                        slice(iy1 - lovects[1,i], iy2 - lovects[1,i]),
                        slice(iz1 - lovects[2,i], iz2 - lovects[2,i]))
+                if ic is not None:
+                    sss = tuple(list(sss) + [ic])
 
                 if isinstance(value, np.ndarray):
                     vslice = (slice(ix1 - ixstart, ix2 - ixstart),
@@ -593,3 +622,119 @@ def JzFPWrapper(level=0, include_ghosts=False):
                             get_lovects=_libwarpx.get_mesh_current_density_fp_lovects,
                             get_fabs=_libwarpx.get_mesh_current_density_fp,
                             level=level, include_ghosts=include_ghosts)
+def ExCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=0, overlaps=[0,1,1],
+                            get_lovects=_libwarpx.get_mesh_electric_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def EyCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=1, overlaps=[1,0,1],
+                            get_lovects=_libwarpx.get_mesh_electric_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def EzCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=2, overlaps=[1,1,0],
+                            get_lovects=_libwarpx.get_mesh_electric_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def BxCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=0, overlaps=[1,0,0],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def ByCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=1, overlaps=[0,1,0],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def BzCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=2, overlaps=[0,0,1],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JxCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=0, overlaps=[0,1,1],
+                            get_lovects=_libwarpx.get_mesh_current_density_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JyCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=1, overlaps=[1,0,1],
+                            get_lovects=_libwarpx.get_mesh_current_density_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JzCPPMLWrapper(level=1, include_ghosts=False):
+    assert level>0, Exception('Coarse patch only available on levels > 0')
+    return _MultiFABWrapper(direction=2, overlaps=[1,1,0],
+                            get_lovects=_libwarpx.get_mesh_current_density_cp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_cp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def ExFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=0, overlaps=[0,1,1],
+                            get_lovects=_libwarpx.get_mesh_electric_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def EyFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=1, overlaps=[1,0,1],
+                            get_lovects=_libwarpx.get_mesh_electric_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def EzFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=2, overlaps=[1,1,0],
+                            get_lovects=_libwarpx.get_mesh_electric_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_electric_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def BxFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=0, overlaps=[1,0,0],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def ByFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=1, overlaps=[0,1,0],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def BzFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=2, overlaps=[0,0,1],
+                            get_lovects=_libwarpx.get_mesh_magnetic_field_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_magnetic_field_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JxFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=0, overlaps=[0,1,1],
+                            get_lovects=_libwarpx.get_mesh_current_density_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JyFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=1, overlaps=[1,0,1],
+                            get_lovects=_libwarpx.get_mesh_current_density_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_fp_pml,
+                            level=level, include_ghosts=include_ghosts)
+
+def JzFPPMLWrapper(level=0, include_ghosts=False):
+    return _MultiFABWrapper(direction=2, overlaps=[1,1,0],
+                            get_lovects=_libwarpx.get_mesh_current_density_fp_lovects_pml,
+                            get_fabs=_libwarpx.get_mesh_current_density_fp_pml,
+                            level=level, include_ghosts=include_ghosts)