Bug fix for BTD - particle BA, and geom, same as field buffer (#3056)

* fix BTD particle container BA, geom, and add assert for probhi == 0

* fix bug with mesh-refinement

* delete commented line

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* with offset added, we dont need the assert anymore

* similar to plotfile, openpmd also initializes tmp from pinned pc, and no need to reset BA

* commenting out the assert

* changes consistent with #3201

* unused var warning fix

* Compute snapshot box at init, expand and shrink buffer BA and particle BA before and after redistribute, close buffer when klab_current == k_lo for that buffer

* unused var

* turning off particle output in BTD CI tests for plotfiles

* reset particle BA only if species output is finite

* add particle output for plotfile format for BTD tests

* add openpmd diags back in 2d test case

* fix input to have the right format

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

1 files changed, 1 insertions, 3 deletions

diff --git a/Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp b/Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp
index 4655128d5..22043c108 100644
--- a/Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp
+++ b/Source/Diagnostics/FlushFormats/FlushFormatPlotfile.cpp
@@ -305,9 +305,7 @@ FlushFormatPlotfile::WriteParticles(const std::string& dir,
         auto tmp = pc->make_alike<amrex::PinnedArenaAllocator>();
         if (isBTD) {
             PinnedMemoryParticleContainer* pinned_pc = particle_diags[i].getPinnedParticleContainer();
-            tmp.SetParticleGeometry(0,pinned_pc->Geom(0));
-            tmp.SetParticleBoxArray(0,pinned_pc->ParticleBoxArray(0));
-            tmp.SetParticleDistributionMap(0, pinned_pc->ParticleDistributionMap(0));
+            tmp = pinned_pc->make_alike<amrex::PinnedArenaAllocator>();
         }
 
         Vector<std::string> real_names;