1D3V Cartesian Support (#2307)

* Build System: Add 1D Geometry

* test PR

* test PR

* 1D cartesian yee algorithm

* fixed typo

* Fixes for PML

* 1D support related multiple changes

* Fix compilation

* change 1D to 1D_Z

* 1D Field Gather and typo fix

* 1D Charge Deposition

* Particle Pusher

* multiple changes related to 1D

* 1D diagnostics and initialization

* PlasmaInjector and PEC fixes for 1D

* clean-up delete diags file

* mobility 1D laser particle and bilinear filter

* deleted diags files

* update laser particle weight formula

* delete diags files

* Azure: Add 1D Cartesian Runner

* 1D fixes for FieldProbe

* Update Docs/source/developers/dimensionality.rst

Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>

* 1d laser injection and langmuir test input files

* 1d tests

* clean up : delete print statements

* analyse simulation result for laser injection and Langmuir tests

* EOL

* delete input files for which there are no automated tests

* delete input files for which there are no automated tests

* add ignore_unused to remove warnings

* remove space

* Fix compilation issues

* fix error : macro name must be an identifier

* Small bug fix

* cleanup Python script for analysis

* bug fix

* bug fix

* Update ParticleProbe: Check 1D in-domain

* Update Source/Make.WarpX

* Update .azure-pipelines.yml

* Add USE_OPENPMD=FALSE to .azure-pipeline.yml

* resolve conflict

* resolve conflict

* fix typo

* Correct out-of-bound access

* Fix Particle BC in WarpXParticleContainer and correct path to checksumAPI in python analysis scripts

* EOL

* Fix bug : accessing out of bound index of cell in 1D

* remove 1d test for cartesian3d

* Fix CI check

* Slight style change

* Address review comments

* Fix GPU compilation Filter.cpp

* Fix CI

* Fix Indentation

* Address review comments

* More consistent ifdef for dimension bigger than 1

* Update Examples/Tests/Langmuir/analysis_langmuir_multi_1d.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update GNUmakefile

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Regression/prepare_file_ci.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianCKCAlgorithm.H

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianNodalAlgorithm.H

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Filter/Filter.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Filter/Filter.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Filter/Filter.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Filter/Filter.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Initialization/PlasmaInjector.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update Source/Initialization/PlasmaInjector.cpp

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* add comment inline to explain twice push_back

* Add amrex::Abort for NCIGodfreyFilter

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Prabhat Kumar <prabhatkumar@kraken.dhcp.lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
Co-authored-by: Remi Lehe <rlehe@lbl.gov>

1 files changed, 8 insertions, 2 deletions

diff --git a/Source/Diagnostics/ReducedDiags/ParticleExtrema.cpp b/Source/Diagnostics/ReducedDiags/ParticleExtrema.cpp
index c30d5820f..f092d53e3 100644
--- a/Source/Diagnostics/ReducedDiags/ParticleExtrema.cpp
+++ b/Source/Diagnostics/ReducedDiags/ParticleExtrema.cpp
@@ -185,6 +185,8 @@ void ParticleExtrema::ComputeDiags (int step)
     int const index_z = 2;
 #elif (defined WARPX_DIM_XZ || defined WARPX_DIM_RZ)
     int const index_z = 1;
+#elif (defined WARPX_DIM_1D_Z)
+    int const index_z = 0;
 #endif
 
     // loop over species
@@ -211,6 +213,8 @@ void ParticleExtrema::ComputeDiags (int step)
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
         { return p.pos(0)*std::cos(p.rdata(PIdx::theta)); });
         ParallelDescriptor::ReduceRealMin(xmin);
+#elif (defined WARPX_DIM_1D_Z)
+        Real xmin = 0.0_rt;
 #else
         Real xmin = ReduceMin( myspc,
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
@@ -224,6 +228,8 @@ void ParticleExtrema::ComputeDiags (int step)
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
         { return p.pos(0)*std::cos(p.rdata(PIdx::theta)); });
         ParallelDescriptor::ReduceRealMax(xmax);
+#elif (defined WARPX_DIM_1D_Z)
+        Real xmax = 0.0_rt;
 #else
         Real xmax = ReduceMax( myspc,
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
@@ -237,7 +243,7 @@ void ParticleExtrema::ComputeDiags (int step)
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
         { return p.pos(0)*std::sin(p.rdata(PIdx::theta)); });
         ParallelDescriptor::ReduceRealMin(ymin);
-#elif (defined WARPX_DIM_XZ)
+#elif (defined WARPX_DIM_XZ || WARPX_DIM_1D_Z)
         Real ymin = 0.0_rt;
 #else
         Real ymin = ReduceMin( myspc,
@@ -252,7 +258,7 @@ void ParticleExtrema::ComputeDiags (int step)
         [=] AMREX_GPU_HOST_DEVICE (const PType& p)
         { return p.pos(0)*std::sin(p.rdata(PIdx::theta)); });
         ParallelDescriptor::ReduceRealMax(ymax);
-#elif (defined WARPX_DIM_XZ)
+#elif (defined WARPX_DIM_XZ || WARPX_DIM_1D_Z)
         Real ymax = 0.0_rt;
 #else
         Real ymax = ReduceMax( myspc,