Commit missing files

1 files changed, 138 insertions, 0 deletions

diff --git a/Source/FieldSolver/SpectralSolver/SpectralAlgorithms/PMLPsatdAlgorithm.cpp b/Source/FieldSolver/SpectralSolver/SpectralAlgorithms/PMLPsatdAlgorithm.cpp
new file mode 100644
index 000000000..46ac851d2
--- /dev/null
+++ b/Source/FieldSolver/SpectralSolver/SpectralAlgorithms/PMLPsatdAlgorithm.cpp
@@ -0,0 +1,138 @@
+#include <PMLPsatdAlgorithm.H>
+#include <WarpXConst.H>
+#include <cmath>
+
+using namespace amrex;
+
+/* \brief Initialize coefficients for the update equation */
+PMLPsatdAlgorithm::PMLPsatdAlgorithm(
+                         const SpectralKSpace& spectral_kspace,
+                         const DistributionMapping& dm,
+                         const int norder_x, const int norder_y,
+                         const int norder_z, const bool nodal, const Real dt)
+     // Initialize members of base class
+     : SpectralBaseAlgorithm( spectral_kspace, dm,
+                              norder_x, norder_y, norder_z, nodal )
+{
+    const BoxArray& ba = spectral_kspace.spectralspace_ba;
+
+    // Allocate the arrays of coefficients
+    C_coef = SpectralCoefficients(ba, dm, 1, 0);
+    S_ck_coef = SpectralCoefficients(ba, dm, 1, 0);
+
+    // Fill them with the right values:
+    // Loop over boxes and allocate the corresponding coefficients
+    // for each box owned by the local MPI proc
+    for (MFIter mfi(ba, dm); mfi.isValid(); ++mfi){
+
+        const Box& bx = ba[mfi];
+
+        // Extract pointers for the k vectors
+        const Real* modified_kx = modified_kx_vec[mfi].dataPtr();
+#if (AMREX_SPACEDIM==3)
+        const Real* modified_ky = modified_ky_vec[mfi].dataPtr();
+#endif
+        const Real* modified_kz = modified_kz_vec[mfi].dataPtr();
+        // Extract arrays for the coefficients
+        Array4<Real> C = C_coef[mfi].array();
+        Array4<Real> S_ck = S_ck_coef[mfi].array();
+
+        // Loop over indices within one box
+        ParallelFor(bx,
+        [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+        {
+            // Calculate norm of vector
+            const Real k_norm = std::sqrt(
+                std::pow(modified_kx[i], 2) +
+#if (AMREX_SPACEDIM==3)
+                std::pow(modified_ky[j], 2) +
+                std::pow(modified_kz[k], 2));
+#else
+                std::pow(modified_kz[j], 2));
+#endif
+
+            // Calculate coefficients
+            constexpr Real c = PhysConst::c;
+            constexpr Real ep0 = PhysConst::ep0;
+            if (k_norm != 0){
+                C(i,j,k) = std::cos(c*k_norm*dt);
+                S_ck(i,j,k) = std::sin(c*k_norm*dt)/(c*k_norm);
+            } else { // Handle k_norm = 0, by using the analytical limit
+                C(i,j,k) = 1.;
+                S_ck(i,j,k) = dt;
+            }
+        });
+    }
+};
+
+/* Advance the E and B field in spectral space (stored in `f`)
+ * over one time step */
+void
+PMLPsatdAlgorithm::pushSpectralFields(SpectralFieldData& f) const{
+
+    // Loop over boxes
+    for (MFIter mfi(f.fields); mfi.isValid(); ++mfi){
+
+        const Box& bx = f.fields[mfi].box();
+
+        // Extract arrays for the fields to be updated
+        Array4<Complex> fields = f.fields[mfi].array();
+        // Extract arrays for the coefficients
+        Array4<const Real> C_arr = C_coef[mfi].array();
+        Array4<const Real> S_ck_arr = S_ck_coef[mfi].array();
+        // Extract pointers for the k vectors
+        const Real* modified_kx_arr = modified_kx_vec[mfi].dataPtr();
+#if (AMREX_SPACEDIM==3)
+        const Real* modified_ky_arr = modified_ky_vec[mfi].dataPtr();
+#endif
+        const Real* modified_kz_arr = modified_kz_vec[mfi].dataPtr();
+
+        // Loop over indices within one box
+        ParallelFor(bx,
+        [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+        {
+            // Record old values of the fields to be updated
+            using Idx = SpectralPMLIndex;
+            const Complex Ex_old = fields(i,j,k,Idx::Exy) \
+                                 + fields(i,j,k,Idx::Exz);
+            const Complex Ey_old = fields(i,j,k,Idx::Eyx) \
+                                 + fields(i,j,k,Idx::Eyz);
+            const Complex Ez_old = fields(i,j,k,Idx::Ezx) \
+                                 + fields(i,j,k,Idx::Ezy);
+            const Complex Bx_old = fields(i,j,k,Idx::Bxy) \
+                                 + fields(i,j,k,Idx::Bxz);
+            const Complex By_old = fields(i,j,k,Idx::Byx) \
+                                 + fields(i,j,k,Idx::Byz);
+            const Complex Bz_old = fields(i,j,k,Idx::Bzx) \
+                                 + fields(i,j,k,Idx::Bzy);
+            // k vector values, and coefficients
+            const Real kx = modified_kx_arr[i];
+#if (AMREX_SPACEDIM==3)
+            const Real ky = modified_ky_arr[j];
+            const Real kz = modified_kz_arr[k];
+#else
+            constexpr Real ky = 0;
+            const Real kz = modified_kz_arr[j];
+#endif
+            constexpr Real c2 = PhysConst::c*PhysConst::c;
+            constexpr Complex I = Complex{0,1};
+            const Real C = C_arr(i,j,k);
+            const Real S_ck = S_ck_arr(i,j,k);
+
+            // Update E
+            fields(i,j,k,Idx::Exy) = C*fields(i,j,k,Idx::Exy) + S_ck*c2*I*ky*Bz_old;
+            fields(i,j,k,Idx::Exz) = C*fields(i,j,k,Idx::Exz) - S_ck*c2*I*kz*By_old;
+            fields(i,j,k,Idx::Eyz) = C*fields(i,j,k,Idx::Eyz) + S_ck*c2*I*kz*Bx_old;
+            fields(i,j,k,Idx::Eyx) = C*fields(i,j,k,Idx::Eyx) - S_ck*c2*I*kx*Bz_old;
+            fields(i,j,k,Idx::Ezx) = C*fields(i,j,k,Idx::Ezx) + S_ck*c2*I*kx*By_old;
+            fields(i,j,k,Idx::Ezy) = C*fields(i,j,k,Idx::Ezy) - S_ck*c2*I*ky*Bx_old;
+            // Update B
+            fields(i,j,k,Idx::Bxy) = C*fields(i,j,k,Idx::Bxy) - S_ck*I*ky*Ez_old;
+            fields(i,j,k,Idx::Bxz) = C*fields(i,j,k,Idx::Bxz) + S_ck*I*kz*Ey_old;
+            fields(i,j,k,Idx::Byz) = C*fields(i,j,k,Idx::Byz) - S_ck*I*kz*Ex_old;
+            fields(i,j,k,Idx::Byx) = C*fields(i,j,k,Idx::Byx) + S_ck*I*kx*Ez_old;
+            fields(i,j,k,Idx::Bzx) = C*fields(i,j,k,Idx::Bzx) - S_ck*I*kx*Ey_old;
+            fields(i,j,k,Idx::Bzy) = C*fields(i,j,k,Idx::Bzy) + S_ck*I*ky*Ex_old;
+        });
+    }
+};