Reformatted BTD fields (#1158)

* fixing bug to initialize CellCenterFunctor for Bx

* create new BTB class and move FullDiagnostics functions from Diagnostics class

* [skip ci] Adding BTDiag class members and allocating them

* output_mf vector of buffers for both Full and BTD

* [skip ci] a few comments

* added more functions in BTDiagnostics for initialization

* [skip-ci] a small comment abour FlushRawData

* [skip-ci] Add new functor class for BTD

* Included BTDiagnostics class and skeleton of functions to be populated

* fix eol and make destructor of base Diag class virtual

* remove redundant query file_prefix in FullDiag class

* Apply suggestions from code review

adding PR suggestions

Co-authored-by: MaxThevenet <mthevenet@lbl.gov>

* cleaning function calls and definitions as suggested in review

* uncomment the assert. It is valid for FullDiag and BTDiag

* Update Source/Diagnostics/Diagnostics.H

adding PR suggestion including comments

Co-authored-by: MaxThevenet <mthevenet@lbl.gov>

* moved InitData to Diagnostics.cpp and call relevant functions from there

* moving FilterComputeAndPack to Diagnostics

* removing commented out code

* remove gpu vector containing map of fields from cc_mf to dst_mf. New diag machinery ensures cc_mf.ncomp == dst_mf.ncomp

* fix eol whitespace

* populating Init functions in BTDiagnostics

* DefineCellCenteredMultiFab should be called only once for all buffers

* add Init functions and constructing BackTransform functor

* call BackTransform operator which currently does nothing

* EOL

* average-down cc data to coarsest level

* loop over level used to allocate output buffer

* some comment about avg-down functions to be moved

* EOL

* Apply suggestions from code review

add pr suggestions

Co-authored-by: MaxThevenet <mthevenet@lbl.gov>

* clarifying pure virtual and virtual functions

* removing namespace amrex and adding corresponding amrex:: prefix

* this should be nlev -- number of levels in the sim, not max allocated levels

* the number of levels to be output could be different from nlev, nmax_lev

* add missing semi-colon!

* add amrex:: prefix to MultiFab to comile psatd

* add new diag files to CMakeLists.txt

* fix compiler errors.

* add amrex:: prefix to fix psatd compilation error

* some more conflicts

* minor cleaning

* EOL

* flatten cc data using finestLevel() and use moving window dir

* EOL

* Apply suggestions from code review

PR suggestions

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* making it readable and adding comments

* add missing semicolon

* add empty operator

* cc functor with ncomp=10 for LT. add prob domain. call functor prep data

* add cc_varnames for 10comp ccfunctor. define prob domain

* Add ith buffer to the operator for diag functors

* add ith buffer for diag functor; define prep functor data

* set plot rho to 1 for BTD

* adding prep data and LorentzTransform

* adding new BTD algorithm with some debugging print statements

* cleaning and ensuring use_gpu=true compiles

* EOL whitespace

* thanks bot! fixed redundant lev definition

* cleaning, adding comments, changing mlo and mhi in diags for boosted frame

* fixing compilation bugs

* ensuring accuracy in 2D by adding dim_map for diag lo and diag hi

* EOL fix

* prevent warning for unused variable

* some more comments and clean-up

* EOL

* fix bug with moving window conversion of mlo mhi

* restoring call to flush out diags after redistribute

* eol

* add reformatted input file for CI

* address PR review comments

* to prevent unused parameter warning

* temporarily removing CI test for reformatted slice BTD to fit CI time-limit

* call ComputePackFlush after syncing time

* Apply suggestions from code review

Co-authored-by: MaxThevenet <maxence.thevenet@desy.de>

* reverting DoComputeAndPack

Co-authored-by: MaxThevenet <mthevenet@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: MaxThevenet <maxence.thevenet@desy.de>

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