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authorGravatar Luca Fedeli <luca.fedeli@cea.fr> 2019-09-30 18:12:58 +0200
committerGravatar Luca Fedeli <luca.fedeli@cea.fr> 2019-09-30 18:12:58 +0200
commit0c2d775fc16f1da5116c1ab198e2518dad5fcac4 (patch)
treec5f581e061fb8c9c78fc0019b9f2868c7bb64ac2 /Source/Particles/PhysicalParticleContainer.cpp
parent309cbaf7dafc84d2ba721b94bbf190b29acaa069 (diff)
parentc636e0f71c6ca6a854ed45bf90f90b943b34fc58 (diff)
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Merge remote-tracking branch 'upstream/dev' into qed_phys_part_with_lambda
Diffstat (limited to 'Source/Particles/PhysicalParticleContainer.cpp')
-rw-r--r--Source/Particles/PhysicalParticleContainer.cpp468
1 files changed, 198 insertions, 270 deletions
diff --git a/Source/Particles/PhysicalParticleContainer.cpp b/Source/Particles/PhysicalParticleContainer.cpp
index bbd14bb53..352745265 100644
--- a/Source/Particles/PhysicalParticleContainer.cpp
+++ b/Source/Particles/PhysicalParticleContainer.cpp
@@ -31,8 +31,11 @@ PhysicalParticleContainer::PhysicalParticleContainer (AmrCore* amr_core, int isp
pp.query("boost_adjust_transverse_positions", boost_adjust_transverse_positions);
pp.query("do_backward_propagation", do_backward_propagation);
+
+ // Initialize splitting
pp.query("do_splitting", do_splitting);
pp.query("split_type", split_type);
+
pp.query("do_continuous_injection", do_continuous_injection);
// Whether to plot back-transformed (lab-frame) diagnostics
// for this species.
@@ -230,7 +233,7 @@ PhysicalParticleContainer::CheckAndAddParticle(Real x, Real y, Real z,
std::array<Real, 3> u,
Real weight)
{
- std::array<Real,PIdx::nattribs> attribs;
+ std::array<ParticleReal,PIdx::nattribs> attribs;
attribs.fill(0.0);
// update attribs with input arguments
@@ -395,13 +398,13 @@ PhysicalParticleContainer::AddPlasma (int lev, RealBox part_realbox)
for (int dir=0; dir<AMREX_SPACEDIM; dir++) {
if ( tile_realbox.lo(dir) <= part_realbox.hi(dir) ) {
Real ncells_adjust = std::floor( (tile_realbox.lo(dir) - part_realbox.lo(dir))/dx[dir] );
- overlap_realbox.setLo( dir, part_realbox.lo(dir) + std::max(ncells_adjust, 0.) * dx[dir]);
+ overlap_realbox.setLo( dir, part_realbox.lo(dir) + std::max(ncells_adjust, Real(0.)) * dx[dir]);
} else {
no_overlap = true; break;
}
if ( tile_realbox.hi(dir) >= part_realbox.lo(dir) ) {
Real ncells_adjust = std::floor( (part_realbox.hi(dir) - tile_realbox.hi(dir))/dx[dir] );
- overlap_realbox.setHi( dir, part_realbox.hi(dir) - std::max(ncells_adjust, 0.) * dx[dir]);
+ overlap_realbox.setHi( dir, part_realbox.hi(dir) - std::max(ncells_adjust, Real(0.)) * dx[dir]);
} else {
no_overlap = true; break;
}
@@ -471,7 +474,7 @@ PhysicalParticleContainer::AddPlasma (int lev, RealBox part_realbox)
ParticleType* pp = particle_tile.GetArrayOfStructs()().data() + old_size;
auto& soa = particle_tile.GetStructOfArrays();
- GpuArray<Real*,PIdx::nattribs> pa;
+ GpuArray<ParticleReal*,PIdx::nattribs> pa;
for (int ia = 0; ia < PIdx::nattribs; ++ia) {
pa[ia] = soa.GetRealData(ia).data() + old_size;
}
@@ -976,13 +979,12 @@ PhysicalParticleContainer::Evolve (int lev,
MultiFab* rho, MultiFab* crho,
const MultiFab* cEx, const MultiFab* cEy, const MultiFab* cEz,
const MultiFab* cBx, const MultiFab* cBy, const MultiFab* cBz,
- Real t, Real dt)
+ Real t, Real dt, DtType a_dt_type)
{
BL_PROFILE("PPC::Evolve()");
BL_PROFILE_VAR_NS("PPC::Evolve::Copy", blp_copy);
BL_PROFILE_VAR_NS("PPC::FieldGather", blp_fg);
BL_PROFILE_VAR_NS("PPC::ParticlePush", blp_ppc_pp);
- BL_PROFILE_VAR_NS("PPC::Evolve::partition", blp_partition);
const std::array<Real,3>& dx = WarpX::CellSize(lev);
const std::array<Real,3>& cdx = WarpX::CellSize(std::max(lev-1,0));
@@ -994,7 +996,6 @@ PhysicalParticleContainer::Evolve (int lev,
BL_ASSERT(OnSameGrids(lev,jx));
MultiFab* cost = WarpX::getCosts(lev);
-
const iMultiFab* current_masks = WarpX::CurrentBufferMasks(lev);
const iMultiFab* gather_masks = WarpX::GatherBufferMasks(lev);
@@ -1025,10 +1026,6 @@ PhysicalParticleContainer::Evolve (int lev,
FArrayBox filtered_Ex, filtered_Ey, filtered_Ez;
FArrayBox filtered_Bx, filtered_By, filtered_Bz;
- std::vector<bool> inexflag;
- Vector<long> pid;
- RealVector tmp;
- ParticleVector particle_tmp;
for (WarpXParIter pti(*this, lev); pti.isValid(); ++pti)
{
@@ -1060,56 +1057,18 @@ PhysicalParticleContainer::Evolve (int lev,
FArrayBox const* bzfab = &(Bz[pti]);
Elixir exeli, eyeli, ezeli, bxeli, byeli, bzeli;
+
if (WarpX::use_fdtd_nci_corr)
{
-#if (AMREX_SPACEDIM == 2)
- const Box& tbox = amrex::grow(pti.tilebox(),{static_cast<int>(WarpX::nox),
- static_cast<int>(WarpX::noz)});
-#else
- const Box& tbox = amrex::grow(pti.tilebox(),{static_cast<int>(WarpX::nox),
- static_cast<int>(WarpX::noy),
- static_cast<int>(WarpX::noz)});
-#endif
-
- // Filter Ex (Both 2D and 3D)
- filtered_Ex.resize(amrex::convert(tbox,WarpX::Ex_nodal_flag));
- // Safeguard for GPU
- exeli = filtered_Ex.elixir();
- // Apply filter on Ex, result stored in filtered_Ex
- nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Ex, Ex[pti], filtered_Ex.box());
- // Update exfab reference
- exfab = &filtered_Ex;
-
- // Filter Ez
- filtered_Ez.resize(amrex::convert(tbox,WarpX::Ez_nodal_flag));
- ezeli = filtered_Ez.elixir();
- nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_Ez, Ez[pti], filtered_Ez.box());
- ezfab = &filtered_Ez;
-
- // Filter By
- filtered_By.resize(amrex::convert(tbox,WarpX::By_nodal_flag));
- byeli = filtered_By.elixir();
- nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_By, By[pti], filtered_By.box());
- byfab = &filtered_By;
-#if (AMREX_SPACEDIM == 3)
- // Filter Ey
- filtered_Ey.resize(amrex::convert(tbox,WarpX::Ey_nodal_flag));
- eyeli = filtered_Ey.elixir();
- nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Ey, Ey[pti], filtered_Ey.box());
- eyfab = &filtered_Ey;
-
- // Filter Bx
- filtered_Bx.resize(amrex::convert(tbox,WarpX::Bx_nodal_flag));
- bxeli = filtered_Bx.elixir();
- nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_Bx, Bx[pti], filtered_Bx.box());
- bxfab = &filtered_Bx;
-
- // Filter Bz
- filtered_Bz.resize(amrex::convert(tbox,WarpX::Bz_nodal_flag));
- bzeli = filtered_Bz.elixir();
- nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Bz, Bz[pti], filtered_Bz.box());
- bzfab = &filtered_Bz;
-#endif
+ // Filter arrays Ex[pti], store the result in
+ // filtered_Ex and update pointer exfab so that it
+ // points to filtered_Ex (and do the same for all
+ // components of E and B).
+ applyNCIFilter(lev, pti.tilebox(), exeli, eyeli, ezeli, bxeli, byeli, bzeli,
+ filtered_Ex, filtered_Ey, filtered_Ez,
+ filtered_Bx, filtered_By, filtered_Bz,
+ Ex[pti], Ey[pti], Ez[pti], Bx[pti], By[pti], Bz[pti],
+ exfab, eyfab, ezfab, bxfab, byfab, bzfab);
}
Exp.assign(np,0.0);
@@ -1119,99 +1078,21 @@ PhysicalParticleContainer::Evolve (int lev,
Byp.assign(np,WarpX::B_external[1]);
Bzp.assign(np,WarpX::B_external[2]);
- long nfine_current = np; //! number of particles depositing to fine grid
- long nfine_gather = np; //! number of particles gathering from fine grid
- if (has_buffer && !do_not_push)
- {
- BL_PROFILE_VAR_START(blp_partition);
- inexflag.resize(np);
- auto& aos = pti.GetArrayOfStructs();
- // We need to partition the large buffer first
- iMultiFab const* bmasks = (WarpX::n_field_gather_buffer >= WarpX::n_current_deposition_buffer) ?
- gather_masks : current_masks;
- int i = 0;
- const auto& msk = (*bmasks)[pti];
- for (const auto& p : aos) {
- const IntVect& iv = Index(p, lev);
- inexflag[i++] = msk(iv);
- }
-
- pid.resize(np);
- std::iota(pid.begin(), pid.end(), 0L);
-
- auto sep = std::stable_partition(pid.begin(), pid.end(),
- [&inexflag](long id) { return inexflag[id]; });
-
- if (WarpX::n_current_deposition_buffer == WarpX::n_field_gather_buffer) {
- nfine_current = nfine_gather = std::distance(pid.begin(), sep);
- } else if (sep != pid.end()) {
- int n_buf;
- if (bmasks == gather_masks) {
- nfine_gather = std::distance(pid.begin(), sep);
- bmasks = current_masks;
- n_buf = WarpX::n_current_deposition_buffer;
- } else {
- nfine_current = std::distance(pid.begin(), sep);
- bmasks = gather_masks;
- n_buf = WarpX::n_field_gather_buffer;
- }
- if (n_buf > 0)
- {
- const auto& msk2 = (*bmasks)[pti];
- for (auto it = sep; it != pid.end(); ++it) {
- const long id = *it;
- const IntVect& iv = Index(aos[id], lev);
- inexflag[id] = msk2(iv);
- }
-
- auto sep2 = std::stable_partition(sep, pid.end(),
- [&inexflag](long id) {return inexflag[id];});
- if (bmasks == gather_masks) {
- nfine_gather = std::distance(pid.begin(), sep2);
- } else {
- nfine_current = std::distance(pid.begin(), sep2);
- }
- }
- }
-
- // only deposit / gather to coarsest grid
- if (m_deposit_on_main_grid && lev > 0) {
- nfine_current = 0;
- }
- if (m_gather_from_main_grid && lev > 0) {
- nfine_gather = 0;
- }
-
- if (nfine_current != np || nfine_gather != np)
- {
- particle_tmp.resize(np);
- for (long ip = 0; ip < np; ++ip) {
- particle_tmp[ip] = aos[pid[ip]];
- }
- std::swap(aos(), particle_tmp);
-
- tmp.resize(np);
- for (long ip = 0; ip < np; ++ip) {
- tmp[ip] = wp[pid[ip]];
- }
- std::swap(wp, tmp);
-
- for (long ip = 0; ip < np; ++ip) {
- tmp[ip] = uxp[pid[ip]];
- }
- std::swap(uxp, tmp);
-
- for (long ip = 0; ip < np; ++ip) {
- tmp[ip] = uyp[pid[ip]];
- }
- std::swap(uyp, tmp);
-
- for (long ip = 0; ip < np; ++ip) {
- tmp[ip] = uzp[pid[ip]];
- }
- std::swap(uzp, tmp);
- }
- BL_PROFILE_VAR_STOP(blp_partition);
+ // Determine which particles deposit/gather in the buffer, and
+ // which particles deposit/gather in the fine patch
+ long nfine_current = np;
+ long nfine_gather = np;
+ if (has_buffer && !do_not_push) {
+ // - Modify `nfine_current` and `nfine_gather` (in place)
+ // so that they correspond to the number of particles
+ // that deposit/gather in the fine patch respectively.
+ // - Reorder the particle arrays,
+ // so that the `nfine_current`/`nfine_gather` first particles
+ // deposit/gather in the fine patch
+ // and (thus) the `np-nfine_current`/`np-nfine_gather` last particles
+ // deposit/gather in the buffer
+ PartitionParticlesInBuffers( nfine_current, nfine_gather, np,
+ pti, lev, current_masks, gather_masks, uxp, uyp, uzp, wp );
}
const long np_current = (cjx) ? nfine_current : np;
@@ -1269,54 +1150,16 @@ PhysicalParticleContainer::Evolve (int lev,
if (WarpX::use_fdtd_nci_corr)
{
-#if (AMREX_SPACEDIM == 2)
- const Box& tbox = amrex::grow(cbox,{static_cast<int>(WarpX::nox),
- static_cast<int>(WarpX::noz)});
-#else
- const Box& tbox = amrex::grow(cbox,{static_cast<int>(WarpX::nox),
- static_cast<int>(WarpX::noy),
- static_cast<int>(WarpX::noz)});
-#endif
-
- // Filter Ex (both 2D and 3D)
- filtered_Ex.resize(amrex::convert(tbox,WarpX::Ex_nodal_flag));
- // Safeguard for GPU
- exeli = filtered_Ex.elixir();
- // Apply filter on Ex, result stored in filtered_Ex
- nci_godfrey_filter_exeybz[lev-1]->ApplyStencil(filtered_Ex, (*cEx)[pti], filtered_Ex.box());
- // Update exfab reference
- cexfab = &filtered_Ex;
-
- // Filter Ez
- filtered_Ez.resize(amrex::convert(tbox,WarpX::Ez_nodal_flag));
- ezeli = filtered_Ez.elixir();
- nci_godfrey_filter_bxbyez[lev-1]->ApplyStencil(filtered_Ez, (*cEz)[pti], filtered_Ez.box());
- cezfab = &filtered_Ez;
-
- // Filter By
- filtered_By.resize(amrex::convert(tbox,WarpX::By_nodal_flag));
- byeli = filtered_By.elixir();
- nci_godfrey_filter_bxbyez[lev-1]->ApplyStencil(filtered_By, (*cBy)[pti], filtered_By.box());
- cbyfab = &filtered_By;
-#if (AMREX_SPACEDIM == 3)
- // Filter Ey
- filtered_Ey.resize(amrex::convert(tbox,WarpX::Ey_nodal_flag));
- eyeli = filtered_Ey.elixir();
- nci_godfrey_filter_exeybz[lev-1]->ApplyStencil(filtered_Ey, (*cEy)[pti], filtered_Ey.box());
- ceyfab = &filtered_Ey;
-
- // Filter Bx
- filtered_Bx.resize(amrex::convert(tbox,WarpX::Bx_nodal_flag));
- bxeli = filtered_Bx.elixir();
- nci_godfrey_filter_bxbyez[lev-1]->ApplyStencil(filtered_Bx, (*cBx)[pti], filtered_Bx.box());
- cbxfab = &filtered_Bx;
-
- // Filter Bz
- filtered_Bz.resize(amrex::convert(tbox,WarpX::Bz_nodal_flag));
- bzeli = filtered_Bz.elixir();
- nci_godfrey_filter_exeybz[lev-1]->ApplyStencil(filtered_Bz, (*cBz)[pti], filtered_Bz.box());
- cbzfab = &filtered_Bz;
-#endif
+ // Filter arrays (*cEx)[pti], store the result in
+ // filtered_Ex and update pointer cexfab so that it
+ // points to filtered_Ex (and do the same for all
+ // components of E and B)
+ applyNCIFilter(lev-1, cbox, exeli, eyeli, ezeli, bxeli, byeli, bzeli,
+ filtered_Ex, filtered_Ey, filtered_Ez,
+ filtered_Bx, filtered_By, filtered_Bz,
+ (*cEx)[pti], (*cEy)[pti], (*cEz)[pti],
+ (*cBx)[pti], (*cBy)[pti], (*cBz)[pti],
+ cexfab, ceyfab, cezfab, cbxfab, cbyfab, cbzfab);
}
// Field gather for particles in gather buffers
@@ -1335,7 +1178,7 @@ PhysicalParticleContainer::Evolve (int lev,
// Particle Push
//
BL_PROFILE_VAR_START(blp_ppc_pp);
- PushPX(pti, m_xp[thread_num], m_yp[thread_num], m_zp[thread_num], dt);
+ PushPX(pti, m_xp[thread_num], m_yp[thread_num], m_zp[thread_num], dt, a_dt_type);
BL_PROFILE_VAR_STOP(blp_ppc_pp);
//
@@ -1397,8 +1240,84 @@ PhysicalParticleContainer::Evolve (int lev,
}
}
}
- // Split particles
- if (do_splitting){ SplitParticles(lev); }
+ // Split particles at the end of the timestep.
+ // When subcycling is ON, the splitting is done on the last call to
+ // PhysicalParticleContainer::Evolve on the finest level, i.e., at the
+ // end of the large timestep. Otherwise, the pushes on different levels
+ // are not consistent, and the call to Redistribute (inside
+ // SplitParticles) may result in split particles to deposit twice on the
+ // coarse level.
+ if (do_splitting && (a_dt_type == DtType::SecondHalf || a_dt_type == DtType::Full) ){
+ SplitParticles(lev);
+ }
+}
+
+void
+PhysicalParticleContainer::applyNCIFilter (
+ int lev, const Box& box,
+ Elixir& exeli, Elixir& eyeli, Elixir& ezeli,
+ Elixir& bxeli, Elixir& byeli, Elixir& bzeli,
+ FArrayBox& filtered_Ex, FArrayBox& filtered_Ey, FArrayBox& filtered_Ez,
+ FArrayBox& filtered_Bx, FArrayBox& filtered_By, FArrayBox& filtered_Bz,
+ const FArrayBox& Ex, const FArrayBox& Ey, const FArrayBox& Ez,
+ const FArrayBox& Bx, const FArrayBox& By, const FArrayBox& Bz,
+ FArrayBox const * & ex_ptr, FArrayBox const * & ey_ptr,
+ FArrayBox const * & ez_ptr, FArrayBox const * & bx_ptr,
+ FArrayBox const * & by_ptr, FArrayBox const * & bz_ptr)
+{
+
+ // Get instances of NCI Godfrey filters
+ const auto& nci_godfrey_filter_exeybz = WarpX::GetInstance().nci_godfrey_filter_exeybz;
+ const auto& nci_godfrey_filter_bxbyez = WarpX::GetInstance().nci_godfrey_filter_bxbyez;
+
+#if (AMREX_SPACEDIM == 2)
+ const Box& tbox = amrex::grow(box,{static_cast<int>(WarpX::nox),
+ static_cast<int>(WarpX::noz)});
+#else
+ const Box& tbox = amrex::grow(box,{static_cast<int>(WarpX::nox),
+ static_cast<int>(WarpX::noy),
+ static_cast<int>(WarpX::noz)});
+#endif
+
+ // Filter Ex (Both 2D and 3D)
+ filtered_Ex.resize(amrex::convert(tbox,WarpX::Ex_nodal_flag));
+ // Safeguard for GPU
+ exeli = filtered_Ex.elixir();
+ // Apply filter on Ex, result stored in filtered_Ex
+ nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Ex, Ex, filtered_Ex.box());
+ // Update ex_ptr reference
+ ex_ptr = &filtered_Ex;
+
+ // Filter Ez
+ filtered_Ez.resize(amrex::convert(tbox,WarpX::Ez_nodal_flag));
+ ezeli = filtered_Ez.elixir();
+ nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_Ez, Ez, filtered_Ez.box());
+ ez_ptr = &filtered_Ez;
+
+ // Filter By
+ filtered_By.resize(amrex::convert(tbox,WarpX::By_nodal_flag));
+ byeli = filtered_By.elixir();
+ nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_By, By, filtered_By.box());
+ by_ptr = &filtered_By;
+#if (AMREX_SPACEDIM == 3)
+ // Filter Ey
+ filtered_Ey.resize(amrex::convert(tbox,WarpX::Ey_nodal_flag));
+ eyeli = filtered_Ey.elixir();
+ nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Ey, Ey, filtered_Ey.box());
+ ey_ptr = &filtered_Ey;
+
+ // Filter Bx
+ filtered_Bx.resize(amrex::convert(tbox,WarpX::Bx_nodal_flag));
+ bxeli = filtered_Bx.elixir();
+ nci_godfrey_filter_bxbyez[lev]->ApplyStencil(filtered_Bx, Bx, filtered_Bx.box());
+ bx_ptr = &filtered_Bx;
+
+ // Filter Bz
+ filtered_Bz.resize(amrex::convert(tbox,WarpX::Bz_nodal_flag));
+ bzeli = filtered_Bz.elixir();
+ nci_godfrey_filter_exeybz[lev]->ApplyStencil(filtered_Bz, Bz, filtered_Bz.box());
+ bz_ptr = &filtered_Bz;
+#endif
}
// Loop over all particles in the particle container and
@@ -1408,7 +1327,7 @@ PhysicalParticleContainer::SplitParticles(int lev)
{
auto& mypc = WarpX::GetInstance().GetPartContainer();
auto& pctmp_split = mypc.GetPCtmp();
- Cuda::ManagedDeviceVector<Real> xp, yp, zp;
+ Cuda::ManagedDeviceVector<ParticleReal> xp, yp, zp;
RealVector psplit_x, psplit_y, psplit_z, psplit_w;
RealVector psplit_ux, psplit_uy, psplit_uz;
long np_split_to_add = 0;
@@ -1424,7 +1343,16 @@ PhysicalParticleContainer::SplitParticles(int lev)
for (WarpXParIter pti(*this, lev); pti.isValid(); ++pti)
{
pti.GetPosition(xp, yp, zp);
+
+ // offset for split particles is computed as a function of cell size
+ // and number of particles per cell, so that a uniform distribution
+ // before splitting results in a uniform distribution after splitting
+ const amrex::Vector<int> ppc_nd = plasma_injector->num_particles_per_cell_each_dim;
const std::array<Real,3>& dx = WarpX::CellSize(lev);
+ amrex::Vector<amrex::Real> split_offset = {dx[0]/2./ppc_nd[0],
+ dx[1]/2./ppc_nd[1],
+ dx[2]/2./ppc_nd[2]};
+
// particle Array Of Structs data
auto& particles = pti.GetArrayOfStructs();
// particle Struct Of Arrays data
@@ -1442,14 +1370,14 @@ PhysicalParticleContainer::SplitParticles(int lev)
np_split_to_add += np_split;
#if (AMREX_SPACEDIM==2)
if (split_type==0){
- // Split particle in two along each axis
+ // Split particle in two along each diagonals
// 4 particles in 2d
for (int ishift = -1; ishift < 2; ishift +=2 ){
for (int kshift = -1; kshift < 2; kshift +=2 ){
// Add one particle with offset in x and z
- psplit_x.push_back( xp[i] + ishift*dx[0]/2 );
+ psplit_x.push_back( xp[i] + ishift*split_offset[0] );
psplit_y.push_back( yp[i] );
- psplit_z.push_back( zp[i] + kshift*dx[2]/2 );
+ psplit_z.push_back( zp[i] + kshift*split_offset[2] );
psplit_ux.push_back( uxp[i] );
psplit_uy.push_back( uyp[i] );
psplit_uz.push_back( uzp[i] );
@@ -1457,11 +1385,11 @@ PhysicalParticleContainer::SplitParticles(int lev)
}
}
} else {
- // Split particle in two along each diagonal
+ // Split particle in two along each axis
// 4 particles in 2d
for (int ishift = -1; ishift < 2; ishift +=2 ){
// Add one particle with offset in x
- psplit_x.push_back( xp[i] + ishift*dx[0]/2 );
+ psplit_x.push_back( xp[i] + ishift*split_offset[0] );
psplit_y.push_back( yp[i] );
psplit_z.push_back( zp[i] );
psplit_ux.push_back( uxp[i] );
@@ -1471,7 +1399,7 @@ PhysicalParticleContainer::SplitParticles(int lev)
// Add one particle with offset in z
psplit_x.push_back( xp[i] );
psplit_y.push_back( yp[i] );
- psplit_z.push_back( zp[i] + ishift*dx[2]/2 );
+ psplit_z.push_back( zp[i] + ishift*split_offset[2] );
psplit_ux.push_back( uxp[i] );
psplit_uy.push_back( uyp[i] );
psplit_uz.push_back( uzp[i] );
@@ -1480,15 +1408,15 @@ PhysicalParticleContainer::SplitParticles(int lev)
}
#elif (AMREX_SPACEDIM==3)
if (split_type==0){
- // Split particle in two along each axis
- // 6 particles in 2d
+ // Split particle in two along each diagonals
+ // 8 particles in 3d
for (int ishift = -1; ishift < 2; ishift +=2 ){
for (int jshift = -1; jshift < 2; jshift +=2 ){
for (int kshift = -1; kshift < 2; kshift +=2 ){
// Add one particle with offset in x, y and z
- psplit_x.push_back( xp[i] + ishift*dx[0]/2 );
- psplit_y.push_back( yp[i] + jshift*dx[1]/2 );
- psplit_z.push_back( zp[i] + jshift*dx[2]/2 );
+ psplit_x.push_back( xp[i] + ishift*split_offset[0] );
+ psplit_y.push_back( yp[i] + jshift*split_offset[1] );
+ psplit_z.push_back( zp[i] + kshift*split_offset[2] );
psplit_ux.push_back( uxp[i] );
psplit_uy.push_back( uyp[i] );
psplit_uz.push_back( uzp[i] );
@@ -1497,11 +1425,11 @@ PhysicalParticleContainer::SplitParticles(int lev)
}
}
} else {
- // Split particle in two along each diagonal
- // 8 particles in 3d
+ // Split particle in two along each axis
+ // 6 particles in 3d
for (int ishift = -1; ishift < 2; ishift +=2 ){
// Add one particle with offset in x
- psplit_x.push_back( xp[i] + ishift*dx[0]/2 );
+ psplit_x.push_back( xp[i] + ishift*split_offset[0] );
psplit_y.push_back( yp[i] );
psplit_z.push_back( zp[i] );
psplit_ux.push_back( uxp[i] );
@@ -1510,7 +1438,7 @@ PhysicalParticleContainer::SplitParticles(int lev)
psplit_w.push_back( wp[i]/np_split );
// Add one particle with offset in y
psplit_x.push_back( xp[i] );
- psplit_y.push_back( yp[i] + ishift*dx[1]/2 );
+ psplit_y.push_back( yp[i] + ishift*split_offset[1] );
psplit_z.push_back( zp[i] );
psplit_ux.push_back( uxp[i] );
psplit_uy.push_back( uyp[i] );
@@ -1519,7 +1447,7 @@ PhysicalParticleContainer::SplitParticles(int lev)
// Add one particle with offset in z
psplit_x.push_back( xp[i] );
psplit_y.push_back( yp[i] );
- psplit_z.push_back( zp[i] + ishift*dx[2]/2 );
+ psplit_z.push_back( zp[i] + ishift*split_offset[2] );
psplit_ux.push_back( uxp[i] );
psplit_uy.push_back( uyp[i] );
psplit_uz.push_back( uzp[i] );
@@ -1557,29 +1485,29 @@ PhysicalParticleContainer::SplitParticles(int lev)
void
PhysicalParticleContainer::PushPX(WarpXParIter& pti,
- Cuda::ManagedDeviceVector<Real>& xp,
- Cuda::ManagedDeviceVector<Real>& yp,
- Cuda::ManagedDeviceVector<Real>& zp,
- Real dt)
+ Cuda::ManagedDeviceVector<ParticleReal>& xp,
+ Cuda::ManagedDeviceVector<ParticleReal>& yp,
+ Cuda::ManagedDeviceVector<ParticleReal>& zp,
+ Real dt, DtType a_dt_type)
{
// This wraps the momentum and position advance so that inheritors can modify the call.
auto& attribs = pti.GetAttribs();
// Extract pointers to the different particle quantities
- Real* const AMREX_RESTRICT x = xp.dataPtr();
- Real* const AMREX_RESTRICT y = yp.dataPtr();
- Real* const AMREX_RESTRICT z = zp.dataPtr();
- Real* const AMREX_RESTRICT ux = attribs[PIdx::ux].dataPtr();
- Real* const AMREX_RESTRICT uy = attribs[PIdx::uy].dataPtr();
- Real* const AMREX_RESTRICT uz = attribs[PIdx::uz].dataPtr();
- const Real* const AMREX_RESTRICT Ex = attribs[PIdx::Ex].dataPtr();
- const Real* const AMREX_RESTRICT Ey = attribs[PIdx::Ey].dataPtr();
- const Real* const AMREX_RESTRICT Ez = attribs[PIdx::Ez].dataPtr();
- const Real* const AMREX_RESTRICT Bx = attribs[PIdx::Bx].dataPtr();
- const Real* const AMREX_RESTRICT By = attribs[PIdx::By].dataPtr();
- const Real* const AMREX_RESTRICT Bz = attribs[PIdx::Bz].dataPtr();
-
- if (WarpX::do_boosted_frame_diagnostic && do_boosted_frame_diags)
+ ParticleReal* const AMREX_RESTRICT x = xp.dataPtr();
+ ParticleReal* const AMREX_RESTRICT y = yp.dataPtr();
+ ParticleReal* const AMREX_RESTRICT z = zp.dataPtr();
+ ParticleReal* const AMREX_RESTRICT ux = attribs[PIdx::ux].dataPtr();
+ ParticleReal* const AMREX_RESTRICT uy = attribs[PIdx::uy].dataPtr();
+ ParticleReal* const AMREX_RESTRICT uz = attribs[PIdx::uz].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Ex = attribs[PIdx::Ex].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Ey = attribs[PIdx::Ey].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Ez = attribs[PIdx::Ez].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Bx = attribs[PIdx::Bx].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT By = attribs[PIdx::By].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Bz = attribs[PIdx::Bz].dataPtr();
+
+ if (WarpX::do_boosted_frame_diagnostic && do_boosted_frame_diags && (a_dt_type!=DtType::SecondHalf))
{
copy_attribs(pti, x, y, z);
}
@@ -1686,15 +1614,15 @@ PhysicalParticleContainer::PushP (int lev, Real dt,
// This wraps the momentum advance so that inheritors can modify the call.
// Extract pointers to the different particle quantities
- Real* const AMREX_RESTRICT ux = attribs[PIdx::ux].dataPtr();
- Real* const AMREX_RESTRICT uy = attribs[PIdx::uy].dataPtr();
- Real* const AMREX_RESTRICT uz = attribs[PIdx::uz].dataPtr();
- const Real* const AMREX_RESTRICT Expp = Exp.dataPtr();
- const Real* const AMREX_RESTRICT Eypp = Eyp.dataPtr();
- const Real* const AMREX_RESTRICT Ezpp = Ezp.dataPtr();
- const Real* const AMREX_RESTRICT Bxpp = Bxp.dataPtr();
- const Real* const AMREX_RESTRICT Bypp = Byp.dataPtr();
- const Real* const AMREX_RESTRICT Bzpp = Bzp.dataPtr();
+ ParticleReal* const AMREX_RESTRICT ux = attribs[PIdx::ux].dataPtr();
+ ParticleReal* const AMREX_RESTRICT uy = attribs[PIdx::uy].dataPtr();
+ ParticleReal* const AMREX_RESTRICT uz = attribs[PIdx::uz].dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Expp = Exp.dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Eypp = Eyp.dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Ezpp = Ezp.dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Bxpp = Bxp.dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Bypp = Byp.dataPtr();
+ const ParticleReal* const AMREX_RESTRICT Bzpp = Bzp.dataPtr();
// Loop over the particles and update their momentum
const Real q = this->charge;
@@ -1720,23 +1648,23 @@ PhysicalParticleContainer::PushP (int lev, Real dt,
}
}
-void PhysicalParticleContainer::copy_attribs(WarpXParIter& pti,const Real* xp,
- const Real* yp, const Real* zp)
+void PhysicalParticleContainer::copy_attribs(WarpXParIter& pti,const ParticleReal* xp,
+ const ParticleReal* yp, const ParticleReal* zp)
{
auto& attribs = pti.GetAttribs();
- Real* AMREX_RESTRICT uxp = attribs[PIdx::ux].dataPtr();
- Real* AMREX_RESTRICT uyp = attribs[PIdx::uy].dataPtr();
- Real* AMREX_RESTRICT uzp = attribs[PIdx::uz].dataPtr();
+ ParticleReal* AMREX_RESTRICT uxp = attribs[PIdx::ux].dataPtr();
+ ParticleReal* AMREX_RESTRICT uyp = attribs[PIdx::uy].dataPtr();
+ ParticleReal* AMREX_RESTRICT uzp = attribs[PIdx::uz].dataPtr();
const auto np = pti.numParticles();
const auto lev = pti.GetLevel();
const auto index = pti.GetPairIndex();
- Real* AMREX_RESTRICT xpold = tmp_particle_data[lev][index][TmpIdx::xold ].dataPtr();
- Real* AMREX_RESTRICT ypold = tmp_particle_data[lev][index][TmpIdx::yold ].dataPtr();
- Real* AMREX_RESTRICT zpold = tmp_particle_data[lev][index][TmpIdx::zold ].dataPtr();
- Real* AMREX_RESTRICT uxpold = tmp_particle_data[lev][index][TmpIdx::uxold].dataPtr();
- Real* AMREX_RESTRICT uypold = tmp_particle_data[lev][index][TmpIdx::uyold].dataPtr();
- Real* AMREX_RESTRICT uzpold = tmp_particle_data[lev][index][TmpIdx::uzold].dataPtr();
+ ParticleReal* AMREX_RESTRICT xpold = tmp_particle_data[lev][index][TmpIdx::xold ].dataPtr();
+ ParticleReal* AMREX_RESTRICT ypold = tmp_particle_data[lev][index][TmpIdx::yold ].dataPtr();
+ ParticleReal* AMREX_RESTRICT zpold = tmp_particle_data[lev][index][TmpIdx::zold ].dataPtr();
+ ParticleReal* AMREX_RESTRICT uxpold = tmp_particle_data[lev][index][TmpIdx::uxold].dataPtr();
+ ParticleReal* AMREX_RESTRICT uypold = tmp_particle_data[lev][index][TmpIdx::uyold].dataPtr();
+ ParticleReal* AMREX_RESTRICT uzpold = tmp_particle_data[lev][index][TmpIdx::uzold].dataPtr();
ParallelFor( np,
[=] AMREX_GPU_DEVICE (long i) {
@@ -1955,9 +1883,9 @@ PhysicalParticleContainer::FieldGather (WarpXParIter& pti,
const Array4<const Real>& by_arr = byfab->array();
const Array4<const Real>& bz_arr = bzfab->array();
- const Real * const AMREX_RESTRICT xp = m_xp[thread_num].dataPtr() + offset;
- const Real * const AMREX_RESTRICT zp = m_zp[thread_num].dataPtr() + offset;
- const Real * const AMREX_RESTRICT yp = m_yp[thread_num].dataPtr() + offset;
+ const ParticleReal * const AMREX_RESTRICT xp = m_xp[thread_num].dataPtr() + offset;
+ const ParticleReal * const AMREX_RESTRICT zp = m_zp[thread_num].dataPtr() + offset;
+ const ParticleReal * const AMREX_RESTRICT yp = m_yp[thread_num].dataPtr() + offset;
// Lower corner of tile box physical domain
const std::array<Real, 3>& xyzmin = WarpX::LowerCorner(box, gather_lev);
@@ -2104,15 +2032,15 @@ PhysicalParticleContainer::buildIonizationMask (const amrex::MFIter& mfi, const
// Otherwise, resize ionization_mask, and get poiters to attribs arrays.
ionization_mask.resize(np);
int * const AMREX_RESTRICT p_ionization_mask = ionization_mask.data();
- const Real * const AMREX_RESTRICT ux = soa.GetRealData(PIdx::ux).data();
- const Real * const AMREX_RESTRICT uy = soa.GetRealData(PIdx::uy).data();
- const Real * const AMREX_RESTRICT uz = soa.GetRealData(PIdx::uz).data();
- const Real * const AMREX_RESTRICT ex = soa.GetRealData(PIdx::Ex).data();
- const Real * const AMREX_RESTRICT ey = soa.GetRealData(PIdx::Ey).data();
- const Real * const AMREX_RESTRICT ez = soa.GetRealData(PIdx::Ez).data();
- const Real * const AMREX_RESTRICT bx = soa.GetRealData(PIdx::Bx).data();
- const Real * const AMREX_RESTRICT by = soa.GetRealData(PIdx::By).data();
- const Real * const AMREX_RESTRICT bz = soa.GetRealData(PIdx::Bz).data();
+ const ParticleReal * const AMREX_RESTRICT ux = soa.GetRealData(PIdx::ux).data();
+ const ParticleReal * const AMREX_RESTRICT uy = soa.GetRealData(PIdx::uy).data();
+ const ParticleReal * const AMREX_RESTRICT uz = soa.GetRealData(PIdx::uz).data();
+ const ParticleReal * const AMREX_RESTRICT ex = soa.GetRealData(PIdx::Ex).data();
+ const ParticleReal * const AMREX_RESTRICT ey = soa.GetRealData(PIdx::Ey).data();
+ const ParticleReal * const AMREX_RESTRICT ez = soa.GetRealData(PIdx::Ez).data();
+ const ParticleReal * const AMREX_RESTRICT bx = soa.GetRealData(PIdx::Bx).data();
+ const ParticleReal * const AMREX_RESTRICT by = soa.GetRealData(PIdx::By).data();
+ const ParticleReal * const AMREX_RESTRICT bz = soa.GetRealData(PIdx::Bz).data();
int* ion_lev = soa.GetIntData(particle_icomps["ionization_level"]).data();
Real c = PhysConst::c;