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Diffstat (limited to 'Exec/uniform_plasma/Visualization.ipynb')
-rw-r--r-- | Exec/uniform_plasma/Visualization.ipynb | 177 |
1 files changed, 177 insertions, 0 deletions
diff --git a/Exec/uniform_plasma/Visualization.ipynb b/Exec/uniform_plasma/Visualization.ipynb new file mode 100644 index 000000000..559f36482 --- /dev/null +++ b/Exec/uniform_plasma/Visualization.ipynb @@ -0,0 +1,177 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "# Overview\n", + "\n", + "This a notebook that inspects the results of a WarpX simulation.\n", + "\n", + "# Instructions\n", + "\n", + "Execute the cells below one by one, by selecting them with your mouse and typing `Shift + Enter`" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "# General imports\n", + "import glob, sys\n", + "# Import numpy and matplotlib\n", + "import numpy as np\n", + "import matplotlib.pyplot as plt\n", + "%matplotlib\n", + "# Import yt\n", + "import yt\n", + "yt.funcs.mylog.setLevel(50) # Deactivate yt verbose\n", + "\n", + "# Import interactive notebook feature\n", + "#from IPython.display import clear_output\n", + "from ipywidgets import interact, IntSlider, RadioButtons\n", + "\n", + "# Find output iterations\n", + "file_list = glob.glob('plt?????')\n", + "iterations = [ int(file_name[3:]) for file_name in file_list ]" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "# Functions to extract and plot the fields" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "def extra_data( field, iteration ):\n", + " \"\"\"\n", + " Extract the 3D array that corresponds to `field` at the \n", + " requested iteration, and returns as a `YTarray`, which \n", + " can be used exactly like a numpy array.\n", + " \"\"\"\n", + " ds = yt.load( './plt%05d/' %iteration )\n", + " data = ds.covering_grid(level=0, \n", + " left_edge=ds.domain_left_edge, \n", + " dims=ds.domain_dimensions)\n", + " return( data[field] ) " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "def plot_field( iteration, field, slicing_direction='y' ):\n", + " # Get the data\n", + " field_array = extra_data( field, iteration )\n", + " \n", + " # Get the position of the edges\n", + " ds = yt.load( './plt%05d/' %iteration )\n", + " left_edge = ds.domain_left_edge.convert_to_mks()*1.e6\n", + " right_edge = ds.domain_right_edge.convert_to_mks()*1.e6\n", + "\n", + " if slicing_direction == 'x':\n", + " n = int( ds.domain_dimensions[0]//2 )\n", + " data2d = field_array[n, :, :]\n", + " extent = [ left_edge[2], right_edge[2], left_edge[1], right_edge[1] ]\n", + " elif slicing_direction == 'y':\n", + " n = int( ds.domain_dimensions[1]//2 )\n", + " data2d = field_array[:, n, :]\n", + " extent = [ left_edge[2], right_edge[2], left_edge[0], right_edge[0] ]\n", + " elif slicing_direction == 'z':\n", + " n = int( ds.domain_dimensions[2]//2 )\n", + " data2d = field_array[:, :, n]\n", + " extent = [ left_edge[1], right_edge[1], left_edge[0], right_edge[0] ]\n", + " plt.clf()\n", + " plt.imshow( data2d, interpolation='nearest', cmap='viridis',\n", + " origin='lower', extent=extent )\n", + " plt.colorbar()" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "# Interactive viewer" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "interact(plot_field, \n", + " iteration = IntSlider(min=min(iterations), max=max(iterations), step=iterations[1]-iterations[0]),\n", + " field = RadioButtons( options=['jx', 'jy', 'jz', 'Ex', 'Ey', 'Ez'], value='jz'),\n", + " slicing_direction = RadioButtons( options=[ 'x', 'y', 'z'], value='y') )" + ] + } + ], + "metadata": { + "anaconda-cloud": {}, + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.6.0" + }, + "widgets": { + "state": { + "5ca3ffc563434f7487da7b1bd657761b": { + "views": [ + { + "cell_index": 5 + } + ] + } + }, + "version": "1.2.0" + } + }, + "nbformat": 4, + "nbformat_minor": 1 +} |