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path: root/Examples/Modules/laser_injection_from_file/analysis.py (follow)
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2022-12-02Clean up examples folders (#3545)Gravatar Edoardo Zoni 1-229/+0
* Clean up examples folders * Use `snake_case` names * Rename `nci_corrector` as `nci_fdtd_stability`
2022-03-03file_min_digits: 5->6 (#2385)Gravatar Axel Huebl 1-2/+2
* file_min_digits: 5->6 100k+ step runs are quite common in WarpX. To simplify post-processing scripts, increase the default to pad to 6 digits. This might break some hand-written scripts that use `?????` wild-cards over `*` wildcards in regex and thus need to be updated. But it at the same time simplifies regexes for analysis of data series and listing of such file series. * Update Scripts to Handle New File Names * Fix CI Test pml_x_psatd * Fix CI Test divb_cleaning_3d * Fix CI Tests with EB Support * Fix CI Tests with RZ Support * Fix CI Tests with PICMI Support * Use glob in Analysis of Collision Tests * Use rstrip in Analysis of Collision Tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix CI Tests for Langmuir_multi_1d/psatd * Fix CI Tests for LaserInjection_1d * Checkpoint-Restart Tests: 5 Digits `regtest.py` in `regression_testing` hard-codes 5 digits: ```diff --- a/regtest.py +++ b/regtest.py @@ -734,7 +734,7 @@ def test_suite(argv): shutil.move(test.diffDir, orig_diff_dir) # get the file number to restart from - restart_file = "%s_chk%5.5d" % (test.name, test.restartFileNum) + restart_file = "%s_chk%6.6d" % (test.name, test.restartFileNum) ``` * PICMI Restart Tests: `warpx_file_min_digits = 5` Same as other CI restart tests: hard-coded value in regression suite makes this necessary. X-ref: https://github.com/AMReX-Codes/regression_testing/issues/119 Co-authored-by: Edoardo Zoni <ezoni@lbl.gov> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-12-29Regression Testing: Use Mainline & CMake (#2556)Gravatar Axel Huebl 1-1/+1
* Regression testing: Use mainline * Update WarpX-tests.ini - Add `cmakeSetupOpts =` - Add `-DWarpX_DIMS`: Not an AMReX convention, so we cannot rely on `dim = ...` - Skip building unneeded tools - Add `install_pip` target: Calling `python -m pip wheel .` and install re-using the build directory. This is mainly for our CI Python regression scrips, users and package managers should just use `python -m pip wheel .` and `... install *whl` directly. * LaserInjectionFromTXYEFile: General Exe Generalize executable globber in script * Docs: Update Regression Testing (CMake) * Azure: Ninja Builds (CMake)
2021-12-21pre-commit: Python imports (#2686)Gravatar Axel Huebl 1-4/+7
* pre-commit: Python imports Add two new Python rules to: - remove unused imports - sort imports according to PEP8 * pre-commit: Python imports Add two new Python rules to: - remove unused imports - sort imports according to PEP8 `.editorconfig`: isort options https://github.com/PyCQA/isort/wiki/isort-Settings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * move import os (mpl) * move import yt (mpl) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Cleanup around matplotlib.use * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Cleaning: double np and lib Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2020-05-01Delete old diagnostics (#933)Gravatar MaxThevenet 1-2/+2
* Create subsection for diags documentation in input parameters list * Replace old diags with new ones IN DOC ONLY * eol whitespace * Check first CI test with new diags, before changing all of them * use diags in all CI * oops, had forgotten all examples except Tests/ * Updated picmi interface to use the new diagnostics * fix bug in how field functors are initialized for diags * fix bug: should always dump output at the end of simulation * eol * update test parameters in ini file * Further fixes to picmi for new diagnostics * Updates PICMI input files to use the new diagnostics * avoid dumping final plotfile twoce * update test to run with new diags * fix typo introduced when fixing merge conflicts * had accidentally removed the max_step here, so the run never ended on TravisCI * Add Diagnostics.py for picmi with new diagnostics * Adding m_ for member variables in new diags (#934) * fixing bug to initialize CellCenterFunctor for Bx * diag_name renamed to m_diag_name * some more diag members made m_ * renaming member variable mf_avg to m_mf_output * fixing m_mf_output to mf_dst in comments * Python documentation updates (#936) * Update Python documentation * Added numpy as a requirement for the Python installation * Cleaned EOL white space in Python documentation * Add periodictable to the Python packages required Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Added periodictable to required packages for pure Python version Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Add hostname to LoadBalanceCosts reduced diagnostic (#902) * Add hostname to reduced diags EOL Fix rd loadbalancecosts test AMREX_USE_MPI EOL move macro to source file Review changes eol add GPU ID if running on GPU eol Typo in comment use vectors to get rid of C-style memory management Fix for test eol * Compute number of unique box data fields in analysis script * analysis script * Use amrex Tokenize to split string * Update WarpXUtil.cpp * Update WarpXUtil.H * [mini] Add contact us section to documentation (#941) * add contact us section to doc * Update Docs/source/contact_us.rst Co-Authored-By: L. Diana Amorim <LDianaAmorim@lbl.gov> * Update Docs/source/contact_us.rst Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov> * stop calling the old WritePlotFile functions * fix new diags, problem with rho and PSATD and particle output variables * remove more deprecated code for old diags * Move checkpoint capability to new diagnostics * error if user asks custom output for checkpoint * eol * some more old diags code deleted * further cleaning * eol * further cleaning, make sure that WarpX compiles with USE_OPENPMD * remove old diags parameters * use new option to change the plotfile name * typo * do not need checkpoint files * adapt to new option for checkpoint * removed unread options as they make tests crash * remove warpx_checkInt from the Python layer * remove some more python wrappers * add checkpoint capability with 2 diags in new output * fix bug in MultiDiagnostics, and (should) fix checkpoint-restart test * fix restart CI test * avoid issue when writing the last plotfile twice * dpgrote's fix for the Python tests * update doc for diagnostics * stop requesting ndiags, this is read from the list of diags * awk to remove ndiags from all example input files * Removed diagnostics.ndiags from picmi interface Co-authored-by: Dave Grote <dpgrote@lbl.gov> Co-authored-by: Dave Grote <grote1@llnl.gov> Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Michael E Rowan <38045958+mrowan137@users.noreply.github.com> Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
2020-01-27Automatically add copyright header with update_copyright.shGravatar Tools 1-0/+8
2020-01-17specify python3 hereGravatar Andrew Myers 1-1/+1
2020-01-17Fix matplotlib error on battraGravatar Remi Lehe 1-0/+2
2020-01-16Fix ShellBang Python AnalysisGravatar Axel Huebl 1-1/+1
Do not assume a location of the python interpreter.
2020-01-15fix analysis.pyGravatar Andrew Myers 1-1/+1
2020-01-15bump tolerance of this testGravatar Andrew Myers 1-1/+1
2020-01-09fixed small bugGravatar Luca Fedeli 1-3/+16
2020-01-09Added commentsGravatar Luca Fedeli 1-0/+6
2020-01-09Added comment suggested by MaxThevenetGravatar Luca Fedeli 1-2/+8
2020-01-09Merge branch 'add_harmonic_beam' of github.com:lucafedeli88/WarpX into ↵Gravatar Luca Fedeli 1-1/+0
add_harmonic_beam
2020-01-09Moved example, updated regression tests and improved related documentationGravatar Luca Fedeli 1-0/+192
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