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* Clean up examples folders
* Use `snake_case` names
* Rename `nci_corrector` as `nci_fdtd_stability`
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* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
`.editorconfig`: isort options
https://github.com/PyCQA/isort/wiki/isort-Settings
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* move import os (mpl)
* move import yt (mpl)
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleanup around matplotlib.use
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleaning: double np and lib
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* Docs: `geometry.dims` option
Add a new, required option to specify the geometry of an
inputs file at runtime.
* Check & Report Runtime Dims Mismatch
* Examples: add `geometry.dims`
* Deprecation Warning: `geometry.coord_sys`
* PICMI: `geometry.dims`
* Improve error message
sounds a bit better
* Improve Doc Description
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
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* Update Scripts to Handle New File Names
* Use glob in Analysis of Collision Tests
* Use rstrip in Analysis of Collision Tests
* Regex: Match ends-in-digits
Thanks Phil! :)
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: Phil Miller <unmobile+gh@gmail.com>
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* Examples: Python ShellBang & Executable
Make sure that all PICMI scripts and all analysis Python scripts
in `Examples/` are:
- executable (`chmod a+x`)
- start with a shell-bang to `python3`
Now, all scripts can be run directly without a `python3 ...` prefix
and also default to the only right executable of Python on older
systems. (New systems always have a `python3` alias, too.)
* Revert a moved numpy
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* Simplify momentum initialization in example input files
* Update benchmarks
* Trigger Build
* Apply suggestions from code review
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
* Add more amrex prefix
* Remove using namespace amrex in PlasmaInjector.cpp
* Fix compilation with OpenPMD
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
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* support only new boundary interface. set pml flags to 0 as default
* use new boundary interface in Examples/Modules/
* use new boundary interface in the input for tests in Examples/Physical_applications
* use new boundary interface in the input for tests in Examples/Tests
* use new bc
* fix typo
* fix typo
* Update Examples/Tests/SingleParticle/inputs_2d
* fix bc in input
* specific bc for electrostatic inputs
* resetting benchmark for PEC particle CI test after fixing the default pml flags from 1 to 0
* Update Examples/Physics_applications/laser_acceleration/inputs_2d_rz
* remove documentation on previous boundary input
* Comment to clarify where in the code is_periodic is appended and how it is defined
* add default parameters for BC in doc
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* Define New Input Parameter interpolation.shape_factors_order
* Use New Input Parameter, Remove Obsolete Ones
* Add New Input Parameter to PICMI Interface
* Update Docs, Use New Input Parameter in Remaining Input Files
* Cleaning
* New Name: algo.particle_shape
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* Add CI coverage for the plotfile particle filter function
* Minor fix in analysis script
* Test all 3 particle filters in 2D/3D/RZ
* Dirty trick to deal with same ID from multiple MPI ranks + enforce 100 characters per line rule
* Fix CI when running on a single MPI rank
* Add new module to avoid duplicate code
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* Unify intervals notation
* Fix diagnostic intervals with PICMI
* Use new syntax in updated Larmor test
* Update PICMI to comply with the standard
* Update new hybrid test
* Update particles_in_PML test input files
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(#1385)
* Add option to only resample cells with high enough number of macroparticles
* Apply suggestions from code review
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* First working version of tests
* Add comments to test
* Add test in WarpX-test.ini and initial checksum json file
* Add resampling to input parameters doc
* Uncomment lines about checksum in analysis script + Fix minor typos
* Add momentum in plotfiles (for checksum) + Fix minor typoes
* Remove particle_theta from checksum json file
* Remove rho from checksum json file
* Fix syntax error in checksum json file
* Add benchmark values
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Have one Resampling object per species
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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Edoardo Zoni
Axel Huebl
Neïl Zaim
Revathi Jambunathan
