| Age | Commit message (Collapse) | Author | Files | Lines |
|---|
|
* Clean up examples folders
* Use `snake_case` names
* Rename `nci_corrector` as `nci_fdtd_stability`
|
|
* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
`.editorconfig`: isort options
https://github.com/PyCQA/isort/wiki/isort-Settings
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* move import os (mpl)
* move import yt (mpl)
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleanup around matplotlib.use
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleaning: double np and lib
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
|
|
* Docs: `geometry.dims` option
Add a new, required option to specify the geometry of an
inputs file at runtime.
* Check & Report Runtime Dims Mismatch
* Examples: add `geometry.dims`
* Deprecation Warning: `geometry.coord_sys`
* PICMI: `geometry.dims`
* Improve error message
sounds a bit better
* Improve Doc Description
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
|
|
* Update Scripts to Handle New File Names
* Use glob in Analysis of Collision Tests
* Use rstrip in Analysis of Collision Tests
* Regex: Match ends-in-digits
Thanks Phil! :)
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: Phil Miller <unmobile+gh@gmail.com>
|
|
* Examples: Python ShellBang & Executable
Make sure that all PICMI scripts and all analysis Python scripts
in `Examples/` are:
- executable (`chmod a+x`)
- start with a shell-bang to `python3`
Now, all scripts can be run directly without a `python3 ...` prefix
and also default to the only right executable of Python on older
systems. (New systems always have a `python3` alias, too.)
* Revert a moved numpy
|
|
* increase tolerance for single precision test
* reset checksum
* change ad['field'] into ad[('mesh','field')] or ad['boxlib','field'] in yt script
* update field access in several files
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_rz.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_2d.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_rz.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_2d.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_rz.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_2d.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi.py
* Update Examples/Tests/Langmuir/analysis_langmuir_multi.py
* Update Examples/Modules/boosted_diags/analysis_3Dbacktransformed_diag.py
* Update Examples/Modules/boosted_diags/analysis_3Dbacktransformed_diag.py
Co-authored-by: Tools <warpx@lbl.gov>
|
|
* support only new boundary interface. set pml flags to 0 as default
* use new boundary interface in Examples/Modules/
* use new boundary interface in the input for tests in Examples/Physical_applications
* use new boundary interface in the input for tests in Examples/Tests
* use new bc
* fix typo
* fix typo
* Update Examples/Tests/SingleParticle/inputs_2d
* fix bc in input
* specific bc for electrostatic inputs
* resetting benchmark for PEC particle CI test after fixing the default pml flags from 1 to 0
* Update Examples/Physics_applications/laser_acceleration/inputs_2d_rz
* remove documentation on previous boundary input
* Comment to clarify where in the code is_periodic is appended and how it is defined
* add default parameters for BC in doc
|
|
* Define New Input Parameter interpolation.shape_factors_order
* Use New Input Parameter, Remove Obsolete Ones
* Add New Input Parameter to PICMI Interface
* Update Docs, Use New Input Parameter in Remaining Input Files
* Cleaning
* New Name: algo.particle_shape
|
|
* Unify intervals notation
* Fix diagnostic intervals with PICMI
* Use new syntax in updated Larmor test
* Update PICMI to comply with the standard
* Update new hybrid test
* Update particles_in_PML test input files
|
|
* send full refRatio IntVect for PML constructor
* ref ratio in PML constructor is an IntVect
* create coarsened box array for PML with lev>0
* add comment clarifying uniform ref ratio
* fix eol
* minimal Box for coarse pml patch
* some more comment
* add warning message
* gix eol
* Add CI test for MR in 2d and 3d with checksum benchmarks and modified analaysis
* remove tab
* plotfile period set to last timestep for CI test
Co-authored-by: Revathi Jambunathan <revanathan@pop-os.localdomain>
|
|
* Input: Remove n<something> options
The information in
- lasers.nlasers
- particles.nspecies
- collisions.ncollisions
is redundant with their `<...>.names` counter-part and requires users
to change info at two locations. We just remove this now since we can
query the size of names automatically in the parser.
* Examples: remove n<something>
Removes:
- lasers.nlasers
- particles.nspecies
- collisions.ncollisions
from examples.
* QED: Update nspecies
* Removed nspecies and nlasers from the Python interface
Co-authored-by: Dave Grote <grote1@llnl.gov>
|
|
* Rename Input to `algo.maxwell_solver`
Rename the input option `algo.maxwell_fdtd_solver` to
`algo.maxwell_solver` and throw a useful error message for users
using the old option.
This is in preparation to unify FDTD and PSATD input control to
reduce mutually exclusive binary variants of WarpX.
* MW Solver Name: Update Examples
Update all example to use the new algo.maxwell_solver option.
* Fix typo in comutation of dt
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
|
|
* add a checksum module for regtests
* All capabilities to checksum tests
* update tests to generate a clean benchmark
* call checksum tests from analysis scripts
* Add checksum json benchmarks
* add missing script, better printing and increase tol
* eol
* fix permission, and bump tolerance
* chmod +x checksumAPI.py
* update benchmarks, probably old ones were wrong due to parallelization
* remove unused variable, thanks lgtm
* special handling when the benchmark is 0
* non-zero but very small CFL for 1 step for init tests
* reset erroneous Python benchmarks
* slightly bump tolerance for initial distribution test
* too small dr results in nans
* improve prints, tolerance handling, and fix tests
* typo
* enable tolerance and fields/particles optional comparison to fix tests
* more minor cleaning in space charge initialization tests
* update Python benchmarks for serial runs
* Run Python tests with 1 rank instead of 2
* fields that are zero should not be in reg tests
* Add developer documentation on checksum regression tests
Co-authored-by: Tools <warpx@lbl.gov>
|
|
* Create subsection for diags documentation in input parameters list
* Replace old diags with new ones IN DOC ONLY
* eol whitespace
* Check first CI test with new diags, before changing all of them
* use diags in all CI
* oops, had forgotten all examples except Tests/
* Updated picmi interface to use the new diagnostics
* fix bug in how field functors are initialized for diags
* fix bug: should always dump output at the end of simulation
* eol
* update test parameters in ini file
* Further fixes to picmi for new diagnostics
* Updates PICMI input files to use the new diagnostics
* avoid dumping final plotfile twoce
* update test to run with new diags
* fix typo introduced when fixing merge conflicts
* had accidentally removed the max_step here, so the run never ended on TravisCI
* Add Diagnostics.py for picmi with new diagnostics
* Adding m_ for member variables in new diags (#934)
* fixing bug to initialize CellCenterFunctor for Bx
* diag_name renamed to m_diag_name
* some more diag members made m_
* renaming member variable mf_avg to m_mf_output
* fixing m_mf_output to mf_dst in comments
* Python documentation updates (#936)
* Update Python documentation
* Added numpy as a requirement for the Python installation
* Cleaned EOL white space in Python documentation
* Add periodictable to the Python packages required
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* Added periodictable to required packages for pure Python version
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Add hostname to LoadBalanceCosts reduced diagnostic (#902)
* Add hostname to reduced diags
EOL
Fix rd loadbalancecosts test
AMREX_USE_MPI
EOL
move macro to source file
Review changes
eol
add GPU ID if running on GPU
eol
Typo in comment
use vectors to get rid of C-style memory management
Fix for test
eol
* Compute number of unique box data fields in analysis script
* analysis script
* Use amrex Tokenize to split string
* Update WarpXUtil.cpp
* Update WarpXUtil.H
* [mini] Add contact us section to documentation (#941)
* add contact us section to doc
* Update Docs/source/contact_us.rst
Co-Authored-By: L. Diana Amorim <LDianaAmorim@lbl.gov>
* Update Docs/source/contact_us.rst
Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
* stop calling the old WritePlotFile functions
* fix new diags, problem with rho and PSATD and particle output variables
* remove more deprecated code for old diags
* Move checkpoint capability to new diagnostics
* error if user asks custom output for checkpoint
* eol
* some more old diags code deleted
* further cleaning
* eol
* further cleaning, make sure that WarpX compiles with USE_OPENPMD
* remove old diags parameters
* use new option to change the plotfile name
* typo
* do not need checkpoint files
* adapt to new option for checkpoint
* removed unread options as they make tests crash
* remove warpx_checkInt from the Python layer
* remove some more python wrappers
* add checkpoint capability with 2 diags in new output
* fix bug in MultiDiagnostics, and (should) fix checkpoint-restart test
* fix restart CI test
* avoid issue when writing the last plotfile twice
* dpgrote's fix for the Python tests
* update doc for diagnostics
* stop requesting ndiags, this is read from the list of diags
* awk to remove ndiags from all example input files
* Removed diagnostics.ndiags from picmi interface
Co-authored-by: Dave Grote <dpgrote@lbl.gov>
Co-authored-by: Dave Grote <grote1@llnl.gov>
Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Michael E Rowan <38045958+mrowan137@users.noreply.github.com>
Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov>
|
|
* always print error and tolerance before ASSERT in CI tests
* eol
* fix typos
* more typo
* typo
|
|
* avoid duplicate tests and plot less often
* fix tests I broke when trying to save plotfiles
|
|
Add Copyright header in all source files
|
|
Remove the `dump_plotfile` switch and only control via
interval value in `plot_int` for plotfiles.
Remove the `dump_openpmd` switch and only control via
interval value in `plot_openpmd` for openPMD data dumps.
openPMD: pick first available backend if unspecified.
|
|
|
|
Clean up input files in Examples/
|
|
|
|
- remove wrong extension '.rt' from previous commits ('rt' string
denotes regression tests and does not represent a file extension)
- put back string 'rt' in input file names wherever needed
- update entries in Regression/WarpX-tests.ini for Travis CI
- add entries in Regression/WarpX-tests.ini corresponding to input files
previously not tested: now testing only run (no analysis)
|
|
- add strings '2d' or '3d' for dimensionality of test case
- use '.' only to separate file names from file extensions
- use uniform file extension '.rt' in all input files
- change permission of input file in /particle_pusher/ from executable
to read/write
- update entries in /Regression/WarpX-tests.ini for Travis CI: comment
out two tests where parameter 'dim' does not match dimensionality in
input file
|
|
|
|
|
|
End-of-line (EOL) whitespaces are verbose and increase diffs and
merge conflicts over time.
Cleaned them up for the `Source/`, `Examples/` and `Tools/` directory
with the following bash one-liner:
```bash
find . -type f -not -path './.git*' \
-exec sed -i 's/[[:blank:]]*$//' {} \;
```
Committed as generic user so git does not credit the many lines
to me:
```bash
GIT_AUTHOR_NAME="Tools" GIT_AUTHOR_EMAIL="warpx@lbl.gov" \
git commit
```
|
|
|
|
|
|
|
|
|
Edoardo Zoni
Axel Huebl
Luca Fedeli
Revathi Jambunathan
NeilZaim
MaxThevenet
Remi Lehe
Tools
Edoardo Zoni
