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* file_min_digits: 5->6
100k+ step runs are quite common in WarpX. To simplify
post-processing scripts, increase the default to pad to 6 digits.
This might break some hand-written scripts that use `?????`
wild-cards over `*` wildcards in regex and thus need to be updated.
But it at the same time simplifies regexes for analysis of data
series and listing of such file series.
* Update Scripts to Handle New File Names
* Fix CI Test pml_x_psatd
* Fix CI Test divb_cleaning_3d
* Fix CI Tests with EB Support
* Fix CI Tests with RZ Support
* Fix CI Tests with PICMI Support
* Use glob in Analysis of Collision Tests
* Use rstrip in Analysis of Collision Tests
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Fix CI Tests for Langmuir_multi_1d/psatd
* Fix CI Tests for LaserInjection_1d
* Checkpoint-Restart Tests: 5 Digits
`regtest.py` in `regression_testing` hard-codes 5 digits:
```diff
--- a/regtest.py
+++ b/regtest.py
@@ -734,7 +734,7 @@ def test_suite(argv):
shutil.move(test.diffDir, orig_diff_dir)
# get the file number to restart from
- restart_file = "%s_chk%5.5d" % (test.name, test.restartFileNum)
+ restart_file = "%s_chk%6.6d" % (test.name, test.restartFileNum)
```
* PICMI Restart Tests: `warpx_file_min_digits = 5`
Same as other CI restart tests: hard-coded value in regression
suite makes this necessary.
X-ref: https://github.com/AMReX-Codes/regression_testing/issues/119
Co-authored-by: Edoardo Zoni <ezoni@lbl.gov>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
* pre-commit: Python imports
Add two new Python rules to:
- remove unused imports
- sort imports according to PEP8
`.editorconfig`: isort options
https://github.com/PyCQA/isort/wiki/isort-Settings
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* move import os (mpl)
* move import yt (mpl)
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleanup around matplotlib.use
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Cleaning: double np and lib
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* Examples: Python ShellBang & Executable
Make sure that all PICMI scripts and all analysis Python scripts
in `Examples/` are:
- executable (`chmod a+x`)
- start with a shell-bang to `python3`
Now, all scripts can be run directly without a `python3 ...` prefix
and also default to the only right executable of Python on older
systems. (New systems always have a `python3` alias, too.)
* Revert a moved numpy
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* Added functionality to pass mpi comm from python script to amrex during initialization
* Fixed missing _ in MPI._sizeof()
* Added functions to get the current processor's rank and total number of processors
* Renamed MPI_Comm to _MPI_Comm_type and defined _MPI_Comm_type in except statement
* Updated comment to explain why mpi4py needs to be imported before loading libwarpx
* Removed ifdef flags that prevent amrex_init_with_inited_mpi from being declared when MPI is off
* Changed amrex_init_with_inited_mpi to be declared even when not using mpi, but will be defined to be functionally the same as amrex_init
* Defined MPI = None to signify whether MPI is used, to add another check when initializing amrex
* Changed ifdef blocks in WarpXWrappers.cpp/h to fix compile errors.
Added ifdef block to conditionally declare amrex_init_with_inited_mpi in WarpXWrappers.h to prevent compile error when not using MPI. Removed ifdef block to declare/define same function in WarpXWrappers.cpp since function needs to be declared even when MPI is not used, but will never be called in that case.
* Changed BL_USE_MPI to AMREX_USE_MPI and removed incorrect MPI=None statement
* Changed BL_USE_MPI to AMREX_USE_MPI
* Added test to verify correct passing of MPI communicator to amrex
* Added ability to pass mpi_comm to sim.step
* Change test to check for differeing outputs when passed different inputs
* Removed obsolete comments refactored program to use more shared code
* Refactored comments
* Updated description to match test
* Removed unecessary imports and updated comments
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Axel Huebl
KZhu-ME
