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* add clang-tidy workflow
* fix missing newline
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* make clang.14.sh executable
* remove non explicitly selected checks
* complete list of dependencies
* fix bug
* specify path of clang-tidy file
* fix bug
* add new check
* remove one check
* add magic numbers check
* removed one check
* keep only one check
* Docs: Conda Dev w/ Boost (#3911)
Add the `boost` package to the conda developer environment.
Used for QED table generation.
* Fix typo in Adastra cluster documentation (#3918)
* add back three checks
* prepare clang-tidy wrapper
* actually use clang-tidy in the script
* test
* fix bug
* actually use clang-tidy
* fixed bug
* fixed bug
* fixed bug
* fixed bug
* remove all checks except the selected 3
* fixed bug
* fixed bug
* fixed bug
* enforce const correctness using clang-tidy
* remove one check
* Fix Concurrency Issue
* BLAS++/LAPACK++ for RZ+PSATD
* Build all 4 WarpX DIMS
* add few echo for test purposes
* try to debug mysterious error
* don't test RZ with clang-tidy
* add back RZ test
* add some const
* fix bug
* check also header files
* remove header filter since it does not work as expected
* fixed bug
* check also WarpX headers
* fix bugs
* continue enforcing const correctness
* continue enforcing const correctness
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* fixed bug
* fix bugs and add new const
* clean .clang-tidy
* make regex more precise according to Weiqun's suggestion
* add more const
* fix bugs
* fix bug
* silence warning on float comparison
* fixed bug
* fixed bugs
* fix bug and add const
* fixed bugs
* fix bug
* fix bug
* fix bug
* fixed bug
* fix bug
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amrex::Abort(Utils::TextMsg::Err("msg")) (#3879)
* use WARPX_ABORT_WITH_MSG instead of amrex::Abort(Utils::TextMsg::Err(msg)) [WIP]
* use WARPX_ABORT_WITH_MESSAGE
* fix typo
* fix missing parenthesis
* remove spaces to prevent automatic text wrapping
* remove wrong parenthesis
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* Introduce `warpx.grid_type` parameter
* Replace `or` with `||`
* Update examples with new user input syntax
* Fix `if` condition
* Improve error message
* Fix `if` condition
* Fix bugs
* Fix warning
* Fix RZ
* Debugging
* Fix RZ
* Fix bug
* Clean up
* More changes:
- set default algo parameters with hybrid grid
- all hybrid input parameters under warpx name
* Set default field gathering algo for hybrid grids
* Update documentation
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* ABLASTR: Coarsen Functions
Move coarsen functions to ABLASTR.
Rename by property of the coarsening function.
* Remove unused imports
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
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* Add "None" as an option for the Maxwell solver
* fixed some of the reasons for failing CI tests
* no longer pass `do_electrostatic` to `GuardCellManager`
* renamed `MaxwellSolverAlgo` to `ElectromagneticSolverAlgo`
* rename `do_electrostatic` to `electrostatic_solver_id`
* rename `maxwell_solver_id` to `electromagnetic_solver_id`
* changes requested during PR review
* remove `do_no_deposit` from tests without field evolution
* Fix doc-string in `GuardCellManager.H`
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
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* Fix stair-case solver in 2D Cartesian
* Generalization for the macroscropic solver
* Update automated test
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Update benchmark
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* initial work to clean WarpX Utils
* remove AMRCore from Ionization tables
* progress
* refactoring of a part of the utils directory
* fix bug
* fixed bug
* fixed bug
* remove debug line accidentally slipped into the code
* remove debug line accidentally slipped into the code
* remove debug line accidentally slipped into the code
* cleaning
* fixed bug
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* use WARPX_ALWAYS_ASSERT_WITH_MESSAGE instead of Abort()
* fix bug
* Update Source/WarpX.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* use more uniform text formatting
* fixed bug
* fixed bug
* using Utils::TextMsg in more files
* fixed bug
* use Utils::TextMsg in more files
* fixed bug
* use Utils::TextMsg in more files
* fixed last merge conflict
* fixed bug
* fix indentation
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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approximation) (#2899)
* Macroscopic Maxwell solver: do not update fields in EB
* Correct unused variable
* Add test with macroscopic solver
* Add automated test
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* Cell Center Macroscopic Properties
* Commit Suggestions from PR Review
* Fix Error for 2D
Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com>
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* interpolate mu to B-location when computing H
* add comments
* modify comment to reflect interpolation
* eol
* add struct to compute macroparameters at x,y,z, and util function to compute cellcoordinates
* fix eol
* remove unused variables, multifabs, and initialization of macro multifabs
* host device function
* fix typo
* doxygen comments
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* initial tests with IWYU
* added a couple of forward declarations
* used iwyu on more files
* progress
* used iwyu on more files
* progress with iwyu
* progress with iwyu
* fixed bug
* progress with iwyu
* progress with IWYU
* progress with IWYU
* fixed bug
* fixed bug
* progress with IWYU
* progress with IWYU + use forward declarations in WarpX.H
* first try with .def files
* fix bugs
* progress with IWYU
* progress with IWYU
* progress with iwyu
* correct copyright
* fixed bug
* fixed bugs
* fix missing include
* fixed bug
* fix bug
* fix bug introduced during last bugfix
* use iwyu on newly added files
* add space
* fix bug
* fix missing include
* fix missing include
* fix missing include
* fixed bugs
* fixed bug
* attempt at fixing issue with math functions
* added missing include
* fixed missing include
* using _fwd.H
* fixed bug
* progress with iwyu
* update AMReX branch
* enforce alphabetic order
* progress with iwyu
* use right version of amrex
* use right version of amrex for tests
* fixed bug
* fix another bug
* fix missing include
* fix missing include
* fix missing include
* updated amrex
* initial work to document new include strategy
* updated documentation
* Fix rst & private includes
* Remove accidentially added files
* Fix rst code blocks
* one more rst block
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Define: _OPENMP -> AMREX_USE_OMP
Replace the define check of `_OPENMP` with the explicit
backend control of `AMREX_USE_OMP` for parallel constructs.
Doing so avoids that we accidentially turn on OpenMP, e.g. if a dependency
pulls it in for linear algebra, I/O, etc. This can led to confusion if the
user explicitly requested a serial build. Also, we might want to use OpenMP
functionality here and there for auxiliary functions w/o having to use the
AMReX OpenMP backend, i.e. because we compile for GPUs.
* Add missing amrex::Gpu::notInLaunchRegion
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* Docs: PSATD Runtime Option
* Tests: PSATD Runtime Option
Add new runtime option to PSATD regression test matrix.
* PICMI: PSATD runtime option
* Source: PSATD Runtime Option
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* fix << declaration of galilean_shift shadows a member of WarpX >>
* fix << unused mu_stag >>
* fix << unused uxp, uyp, uzp >>
* renamed galilean_shift (member variable of WarpX class) into m_galilean_shift
* renamed v_galilean to m_v_galilean when appropriate
* fixed bug introduced in latest commit
* fix <<comparison of integer expressions of different signedness>>
* Update Source/FieldSolver/FiniteDifferenceSolver/MacroscopicEvolveE.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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* Adding macro-E Push and new file
* Add macroEvolveE, call it, and include algo selection in utils
* fix eol
* Fixing bug in macroE for sigma method 1
* changing MacroEvolveE to MacroscopicEvolveE
* add class for macroscopicproperties and an object in WarpX class
* fix eol
* adding templated ckc call with comment that EvolveE is same for yee and ckc
* add header file pointing to ckc algorithm
* adding obejct m_macroscopic_properties to access sigma,eps,mu
* some cleaning
* Adding comments
* adding documentation
* spelling wandroff to wendroff
* fixing eol
* eol
* const in the right place. Thanks bot!
* profiler for macroscopic evolveE
* MultiFab macroproperties with constant init, templated macroEvolveE,
* call macroparameter init
* eol fix
* add parser for macroscopic properties
* fix eol
* adding input file
* __device__ lambda cannot be private in class
* fix grown tilebox declaration for init data
* [skip ci] some more merge conflicts
* some comments
* removing redundant calls to Macroscopic EvolveE
* [skip ci] fix growntilebox for initializing macro mf
* clean and fix BackwardEuler call for ckc
* commenting out old alpha and beta implementations
* temporarily commiting local changes with calls in Interp.
* fixing a typo
* clean and add documentation
* remove the test input file
* fix typo
* eol fix
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
* PR suggestions
* Update Source/FieldSolver/WarpXPushFieldsEM.cpp
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
* removing unnecessary includes
* adding 2D initialization for stag arrays
* removing init_style input parameter for material properties
* eol fix
* Adding dE/dt eq curl of (B/mu)
* PhysConst ep0 and mu0
* Add functor for field access for macro and vacuum (B/mu)
* fix eol
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/FieldAccessorFunctors.H
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Apply suggestions from code review
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianCKCAlgorithm.H
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Apply suggestions from code review
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* fixing compilation errors and removing Gpu ManagedVector
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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* Adding macro-E Push and new file
* Add macroEvolveE, call it, and include algo selection in utils
* fix eol
* Fixing bug in macroE for sigma method 1
* changing MacroEvolveE to MacroscopicEvolveE
* add class for macroscopicproperties and an object in WarpX class
* fix eol
* adding templated ckc call with comment that EvolveE is same for yee and ckc
* add header file pointing to ckc algorithm
* adding obejct m_macroscopic_properties to access sigma,eps,mu
* some cleaning
* Adding comments
* adding documentation
* spelling wandroff to wendroff
* fixing eol
* eol
* const in the right place. Thanks bot!
* profiler for macroscopic evolveE
* re-introduced deleted line when fixing conflict to declare templated EvolveBPMLCartesian function
* fixing if-else statement for RZ in MAcroscopicEvolveE.cpp
* adding suggestions and corrections made in PR review.
* fixing grammar in docs
* fix eol whitespace
* fix typo
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Luca Fedeli
Edoardo Zoni
Axel Huebl
Roelof Groenewald
Remi Lehe
Revathi Jambunathan
