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#!/usr/bin/env python3
# Copyright 2020 Andrew Myers, Axel Huebl, Luca Fedeli
# Remi Lehe
#
# This file is part of WarpX.
#
# License: BSD-3-Clause-LBNL
# This file is part of the WarpX automated test suite. It is used to test the
# injection of a laser pulse from an external binary file.
#
# - Generate an input binary file with a gaussian laser pulse.
# - Run the WarpX simulation for time T, when the pulse is fully injected
# - Compute the theory for laser envelope at time T
# - Compare theory and simulation, for both envelope and central frequency
import glob
import os
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import numpy as np
from scipy.signal import hilbert
import yt ; yt.funcs.mylog.setLevel(50)
#Maximum acceptable error for this test
relative_error_threshold = 0.065
#Physical parameters
um = 1.e-6
fs = 1.e-15
c = 299792458
#Parameters of the gaussian beam
wavelength = 1.*um
w0 = 6.*um
tt = 10.*fs
x_c = 0.*um
t_c = 20.*fs
foc_dist = 10*um
E_max = 1e12
rot_angle = -np.pi/4.0
#Parameters of the tx grid
x_l = -12.0*um
x_r = 12.0*um
x_points = 480
t_l = 0.0*fs
t_r = 40.0*fs
t_points = 400
tcoords = np.linspace(t_l, t_r, t_points)
xcoords = np.linspace(x_l, x_r, x_points)
def gauss(T,X,Y,opt):
"""Compute the electric field for a Gaussian laser pulse.
This is used to write the binary input file.
"""
k0 = 2.0*np.pi/wavelength
inv_tau2 = 1./tt/tt
osc_phase = k0*c*(T-t_c)
diff_factor = 1.0 + 1.0j* foc_dist * 2/(k0*w0*w0)
inv_w_2 = 1.0/(w0*w0*diff_factor)
pre_fact = np.exp(1.0j * osc_phase)
if opt == '3d':
pre_fact = pre_fact/diff_factor
else:
pre_fact = pre_fact/np.sqrt(diff_factor)
exp_arg = - (X*X + Y*Y)*inv_w_2 - inv_tau2 * (T-t_c)*(T-t_c)
return np.real(pre_fact * np.exp(exp_arg))
# Function for the envelope
def gauss_env(T,XX,ZZ):
'''Function to compute the theory for the envelope
'''
X = np.cos(rot_angle)*XX + np.sin(rot_angle)*ZZ
Z = -np.sin(rot_angle)*XX + np.cos(rot_angle)*ZZ
inv_tau2 = 1./tt/tt
inv_w_2 = 1.0/(w0*w0)
exp_arg = - (X*X)*inv_w_2 - inv_tau2 / c/c * (Z-T*c)*(Z-T*c)
return E_max * np.real(np.exp(exp_arg))
def write_file(fname, x, y, t, E):
""" For a given filename fname, space coordinates x and y, time coordinate t
and field E, write a WarpX-compatible input binary file containing the
profile of the laser pulse
"""
with open(fname, 'wb') as file:
flag_unif = 0
file.write(flag_unif.to_bytes(1, byteorder='little'))
file.write((len(t)).to_bytes(4, byteorder='little', signed=False))
file.write((len(x)).to_bytes(4, byteorder='little', signed=False))
file.write((len(y)).to_bytes(4, byteorder='little', signed=False))
file.write(t.tobytes())
file.write(x.tobytes())
file.write(y.tobytes())
file.write(E.tobytes())
def write_file_unf(fname, x, y, t, E):
""" For a given filename fname, space coordinates x and y, time coordinate t
and field E, write a WarpX-compatible input binary file containing the
profile of the laser pulse. This function should be used in the case
of a uniform spatio-temporal mesh
"""
with open(fname, 'wb') as file:
flag_unif = 1
file.write(flag_unif.to_bytes(1, byteorder='little'))
file.write((len(t)).to_bytes(4, byteorder='little', signed=False))
file.write((len(x)).to_bytes(4, byteorder='little', signed=False))
file.write((len(y)).to_bytes(4, byteorder='little', signed=False))
file.write(t[0].tobytes())
file.write(t[-1].tobytes())
file.write(x[0].tobytes())
file.write(x[-1].tobytes())
if len(y) == 1 :
file.write(y[0].tobytes())
else :
file.write(y[0].tobytes())
file.write(y[-1].tobytes())
file.write(E.tobytes())
def create_gaussian_2d():
T, X, Y = np.meshgrid(tcoords, xcoords, np.array([0.0]), indexing='ij')
E_t = gauss(T,X,Y,'2d')
write_file("gauss_2d.txye", xcoords, np.array([0.0]), tcoords, E_t)
write_file_unf("gauss_2d_unf.txye", xcoords, np.array([0.0]), tcoords, E_t)
def do_analysis(fname, compname, steps):
ds = yt.load(fname)
dt = ds.current_time.to_value()/steps
# Define 2D meshes
x = np.linspace(
ds.domain_left_edge[0],
ds.domain_right_edge[0],
ds.domain_dimensions[0]).v
z = np.linspace(
ds.domain_left_edge[ds.dimensionality-1],
ds.domain_right_edge[ds.dimensionality-1],
ds.domain_dimensions[ds.dimensionality-1]).v
X, Z = np.meshgrid(x, z, sparse=False, indexing='ij')
# Compute the theory for envelope
env_theory = gauss_env(+t_c-ds.current_time.to_value(), X,Z)+gauss_env(-t_c+ds.current_time.to_value(), X,Z)
# Read laser field in PIC simulation, and compute envelope
all_data_level_0 = ds.covering_grid(level=0,left_edge=ds.domain_left_edge, dims=ds.domain_dimensions)
F_laser = all_data_level_0['boxlib', 'Ey'].v.squeeze()
env = abs(hilbert(F_laser))
extent = [ds.domain_left_edge[ds.dimensionality-1], ds.domain_right_edge[ds.dimensionality-1],
ds.domain_left_edge[0], ds.domain_right_edge[0] ]
# Plot results
plt.figure(figsize=(8,6))
plt.subplot(221)
plt.title('PIC field')
plt.imshow(F_laser, extent=extent)
plt.colorbar()
plt.subplot(222)
plt.title('PIC envelope')
plt.imshow(env, extent=extent)
plt.colorbar()
plt.subplot(223)
plt.title('Theory envelope')
plt.imshow(env_theory, extent=extent)
plt.colorbar()
plt.subplot(224)
plt.title('Difference')
plt.imshow(env-env_theory, extent=extent)
plt.colorbar()
plt.tight_layout()
plt.savefig(compname, bbox_inches='tight')
relative_error_env = np.sum(np.abs(env-env_theory)) / np.sum(np.abs(env))
print("Relative error envelope: ", relative_error_env)
assert(relative_error_env < relative_error_threshold)
fft_F_laser = np.fft.fft2(F_laser)
freq_rows = np.fft.fftfreq(F_laser.shape[0],dt)
freq_cols = np.fft.fftfreq(F_laser.shape[1],dt)
pos_max = np.unravel_index(np.abs(fft_F_laser).argmax(), fft_F_laser.shape)
freq = np.sqrt((freq_rows[pos_max[0]])**2 + (freq_cols[pos_max[1]]**2))
exp_freq = c/wavelength
relative_error_freq = np.abs(freq-exp_freq)/exp_freq
print("Relative error frequency: ", relative_error_freq)
assert(relative_error_freq < relative_error_threshold)
def launch_analysis(executable):
create_gaussian_2d()
os.system("./" + executable + " inputs.2d_test_txye diag1.file_prefix=diags/plotfiles/plt")
do_analysis("diags/plotfiles/plt00250/", "comp_unf.pdf", 250)
os.system("sed 's/gauss_2d_unf.txye/gauss_2d.txye/g' inputs.2d_test_txye > inputs.2d_test_txye_non_unf")
os.system("./" + executable + " inputs.2d_test_txye_non_unf diag1.file_prefix=diags/plotfiles/plt")
do_analysis("diags/plotfiles/plt00250/", "comp_non_unf.pdf", 250)
def main() :
executables = glob.glob("main2d*")
if len(executables) == 1 :
launch_analysis(executables[0])
else :
assert(False)
print('Passed')
if __name__ == "__main__":
main()
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