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#! /usr/bin/env python
"""
This script checks the space-charge initialization routine, by
verifying that the space-charge field of a Gaussian beam corresponds to
the expected theoretical field.
"""
import sys
import yt
import numpy as np
import matplotlib.pyplot as plt
import scipy.constants as scc
from scipy.special import gammainc
yt.funcs.mylog.setLevel(0)
# Parameters from the Simulation
Qtot = -1.e-20
r0 = 2.e-6
# Open data file
filename = sys.argv[1]
ds = yt.load( filename )
# Extract data
ad0 = ds.covering_grid(level=0, left_edge=ds.domain_left_edge, dims=ds.domain_dimensions)
Ex_array = ad0['Ex'].to_ndarray().squeeze()
if ds.dimensionality == 2:
# Rename the z dimension as y, so as to make this script work for 2d and 3d
Ey_array = ad0['Ez'].to_ndarray().squeeze()
elif ds.dimensionality == 3:
Ey_array = ad0['Ey'].to_ndarray()
Ez_array = ad0['Ez'].to_ndarray()
# Extract grid coordinates
Nx, Ny, Nz = ds.domain_dimensions
xmin, ymin, zmin = ds.domain_left_edge.v
Lx, Ly, Lz = ds.domain_width.v
x = xmin + Lx/Nx*(0.5+np.arange(Nx))
y = ymin + Ly/Ny*(0.5+np.arange(Ny))
z = zmin + Lz/Nz*(0.5+np.arange(Nz))
# Compute theoretical field
if ds.dimensionality == 2:
x_2d, y_2d = np.meshgrid(x, y, indexing='ij')
r2 = x_2d**2 + y_2d**2
factor = (Qtot/r0)/(2*np.pi*scc.epsilon_0*r2) * (1-np.exp(-r2/(2*r0**2)))
Ex_th = x_2d * factor
Ey_th = y_2d * factor
elif ds.dimensionality == 3:
x_2d, y_2d, z_2d = np.meshgrid(x, y, z, indexing='ij')
r2 = x_2d**2 + y_2d**2 + z_2d**2
factor = Qtot/(4*np.pi*scc.epsilon_0*r2**1.5) * gammainc(3./2, r2/(2.*r0**2))
Ex_th = factor*x_2d
Ey_th = factor*y_2d
Ez_th = factor*z_2d
# Plot theory and data
def make_2d(arr):
if arr.ndim == 3:
return arr[:,:,Nz//2]
else:
return arr
plt.figure(figsize=(10,10))
plt.subplot(221)
plt.title('Ex: Theory')
plt.imshow(make_2d(Ex_th))
plt.colorbar()
plt.subplot(222)
plt.title('Ex: Simulation')
plt.imshow(make_2d(Ex_array))
plt.colorbar()
plt.subplot(223)
plt.title('Ey: Theory')
plt.imshow(make_2d(Ey_th))
plt.colorbar()
plt.subplot(224)
plt.title('Ey: Simulation')
plt.imshow(make_2d(Ey_array))
plt.colorbar()
plt.savefig('Comparison.png')
# Automatically check the results
print( 'Relative error in Ex: %.3f'%(abs(Ex_array-Ex_th).max()/Ex_th.max()))
assert np.allclose( Ex_array, Ex_th, atol=0.15*Ex_th.max() )
assert np.allclose( Ey_array, Ey_th, atol=0.15*Ey_th.max() )
if ds.dimensionality == 3:
assert np.allclose( Ez_array, Ez_th, atol=0.15*Ez_th.max() )
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