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path: root/macros/ui/local-shared-attribute.rs

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checkpoint files * adapt to new option for checkpoint * removed unread options as they make tests crash * remove warpx_checkInt from the Python layer * remove some more python wrappers * add checkpoint capability with 2 diags in new output * fix bug in MultiDiagnostics, and (should) fix checkpoint-restart test * fix restart CI test * avoid issue when writing the last plotfile twice * dpgrote's fix for the Python tests * update doc for diagnostics * stop requesting ndiags, this is read from the list of diags * awk to remove ndiags from all example input files * Removed diagnostics.ndiags from picmi interface Co-authored-by: Dave Grote <dpgrote@lbl.gov> Co-authored-by: Dave Grote <grote1@llnl.gov> Co-authored-by: Revathi Jambunathan <41089244+RevathiJambunathan@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Michael E Rowan <38045958+mrowan137@users.noreply.github.com> Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov> 2020-05-01Most fun PR ever: print error and tolerance before ASSERT in CI (#967)

MaxThevenet 18-44/+133 * always print error and tolerance before ASSERT in CI tests * eol * fix typos * more typo * typo 2020-05-01Switch to new overloads of makeKnapSack, makeSFC w/ reduced comms (#955)

Michael E Rowan 2-72/+50 2020-05-01openPMD: Fix no-MPI build (#968)

Axel Huebl 2-2/+12 2020-04-30Update Python docs (#960)

David Grote 3-7/+26 * Update Python docs Added more info for Cori. Added recommendation of using virtual environments. * Update Docs/source/running_python/how_to_run.rst Co-Authored-By: L. Diana Amorim <LDianaAmorim@lbl.gov> Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov> 2020-04-30openPMD: Binary Suffix (#966)

Axel Huebl 1-0/+1 Add the binary suffix `.OPMD` to WarpX binaries. 2020-04-30Fix bug when compiling OpenPMD + 2D (#963)

MaxThevenet 1-4/+4 * WARPX_DIM_2D doesn't exist, this should be WARPX_DIM_RZ * Update Source/Particles/PhysicalParticleContainer.cpp Co-Authored-By: L. Diana Amorim <LDianaAmorim@lbl.gov> Co-authored-by: L. Diana Amorim <LDianaAmorim@lbl.gov> 2020-04-29CI: macOS Single Precision (#964)

Axel Huebl 4-48/+11 * CI: macOS Single Precision Add another compile with single precision on AppleClang. * AMReX' complex for everything This is nice and compliant and works on all platforms. 2020-04-29use direct deposition for nodal tests also on Garuda (#962)

MaxThevenet 1-2/+2 2020-04-29[Mini]Fix Langmuir_multi_nodal test case (#961)

David Grote 1-2/+2 * Fix Langmuir_multi_nodal test case Current deposition was changed from esirkepov to direct * Also use direct deposition for PSATD nodal Co-authored-by: MaxThevenet <mthevenet@lbl.gov> 2020-04-28Style change to match the standard (#957)

Michael E Rowan 15-52/+52 2020-04-28Add checkpoint capability to new diags (#951)

MaxThevenet 7-15/+172 * Move checkpoint capability to new diagnostics * error if user asks custom output for checkpoint * eol * Apply suggestions from code review Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/WarpX.H Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> 2020-04-28Reduce size of test output (#857)

MaxThevenet 7-104/+50 * reduce size of qed_breit_wheeler_opt_depth_evolution * Update analysis_3d_optical_depth_evolution.py * Update analysis_3d_optical_depth_evolution.py * reduce size of Langmuir_multi and delete Langmuir_{x,y,z} * reduce ppc and filter fields dumped * finalize cartesian Langmuir tests * minor changes to python rz multimode * smaller restart test * reduce size of TwoParticle_electrostatic * smaller laser_injection test * revert changes in QED 3D BW test as it is done in another PR 2020-04-26minor code changes to remove warnings when compiling with gcc DEBUG=TRUE (#950)

MaxThevenet 7-87/+89 2020-04-24Read species distribution from OPMD - part 3 (#883)

L. Diana Amorim 5-37/+114 * Added <species>.profile=external_file and .profile_file * Added description of input parameters to Docs * Changed from profile to injection option for external file * Fix typo in amrex abort message (due to copy paste) * Added the OpenPMD use amrex abort message * Minor fix - not sure how to remove EOL issue * Tried to add AddExternalFileBeam functon to PhysicalParticleContainer * Trued to fix EOL white space issue * Added read/print species name from OPMD file * Fixed OpenPMD charge and mass read * Added number of particles in species * Added nparts and converted charge/mass units to SI * Fix to nr of particles * Added q_tot parameter to determine part weight * Added macroparticle's weight * Fixed std::int typo - use only int * Added read x,y and z + ifdef 3D * Added velocity of particles and stored in container * Converted velocities to SI * No need to specfy momentum distribution if external file is used * Update Source/Initialization/PlasmaInjector.cpp Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/Particles/PhysicalParticleContainer.cpp Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/Particles/PhysicalParticleContainer.cpp Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/Particles/PhysicalParticleContainer.H Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Update Source/Particles/PhysicalParticleContainer.cpp Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * No need to include openPMD header yet * Fixed const in AddExternalFileBeam * Fix compatibility with read_opmd and read_opmd_2 * Corrected position and charge units/sign * Added Doc note and abort message for RZ * Fix typo and EOL * Minor fixes * Fixed details. Added fix to EOL - testing * Changed to physical_charge and explained it in Docs * Fix header extra openPMD include files * Removed additional debugging comments * Try doxygen again * Fix plasmainjector physical_q_tot * Change apart to auto (not long as in gaussian beam injection style) Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Correct for new type of npart Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * Removed Geant4 renormalization * Read openPMD file and checked its units * Trying to correct momentum information in plotfiles * Compilation error - > SegFault 11 * Added unitSI() to each position/momentum direction. Compilation SegFault * Re-structured code to use only once series.flush() * Commented out amrex::Print() s * Path to fix issue * Update after review * Chanegd <physical_q_tot> to <q_tot> and made it optional * Fixed documentation typo and re-organized it * Added const to npart as per reviewer recommendation * Fixed issue with velocity - which became momentum * Fixed 2D and 3D options + documentation * Implemented fixes from past reviewsand fixed duplicate entry in Docs * Fix auto in iterator in for loop * Added fixes according to reviewer * Revert "Added fixes according to reviewer" This reverts commit 0a485d83c28014c8b6f53a30f26719f23f89bad5. * Fixed IO block and reordered logic with Axel * Fix spaces Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> 2020-04-24Re-initialize diag functors after LoadBalance (#943)

Revathi Jambunathan 7-56/+89 * fixing bug to initialize CellCenterFunctor for Bx * new function to initialize diag functors called from regrid * add comments and clean * more cleaning * use of unique_ptrs to prevent memory leak * fixing eol * Apply suggestions from code review Co-Authored-By: MaxThevenet <mthevenet@lbl.gov> * rho_new in PSATD defined using unique_ptr * initialize field functor per level * adding a comment for input lev * more comments * clearning * comments * space in function when called * fix eol Co-authored-by: MaxThevenet <mthevenet@lbl.gov>


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