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ht'> Fix type for local field data pointer. 2020-02-24Profiler wrapper to allow for cudaDeviceSynchronize (#738)

MaxThevenet 35-117/+178 * add warpx profiler wrapper * call WX profiler wrapper instead of BL * EOL and cleaning * add doc on profile syncs * do not use PROFILE macros in .H files * replace WX_PROFILE with WARPX_PROFILE and use bool instead of int * typo * this file shouldn't be there 2020-02-24Split travis tests in bigger matrix (#723)

MaxThevenet 6-26/+113 * split travis tests in bigger matrix * split more TravisCI tests, add electrostatic, use defaults values * typo * need to split psatd too * consistent variable names and use function to avoid duplication * fix typo for qed tests * typo * also need to update run_tests.sg * change matrix * try gathering 2D and 3D tests together * split test matrix to have 2 compilations for each group * EOL * avoid compiling electrostatic * typo * [ci skip] Update Regression/prepare_file_travis.py Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * this is an OR, not an AND * test that TravisCI matrix encompasses all tests * debugging * debugging * should fix the error * Apply suggestions from code review Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * use fewer && * safeguard * should work like that Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> 2020-02-24corrected two typos missed during review of PR-719 (#741)

Glenn Richardson 1-2/+2 2020-02-24update due to change in amrex (#740)

Andrew Myers 1-2/+2 2020-02-21Call AMReX Bin sort (#739)

MaxThevenet 6-4/+25 * call AMReX Bin sort instead of Cell sort * proper initialization of bin size * IntVect declaration must work in 2D and 3D * Apply suggestions from code review Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * remove print statement Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> 2020-02-21Make the option to exchange all guard cells safer (#709)

MaxThevenet 9-62/+106 * make the option to exchange all guard cells safer * EOL **** * more consistent naming in guard cells test script 2020-02-20Minor refactoring of space-charge calculation (#732)

Remi Lehe 5-10/+29 2020-02-20openPMD: warn if step is already written (#718)

guj 3-7/+19 * making sure iterations are written at most once. * prints a warning when iteration is written more than once writting is not stopped * Fixed tabs * included <iostream> as requested by Axel 2020-02-20Add Reset Random Seed Feature (#717)

Yinjian Zhao 2-0/+31 * Add ResetRandomSeed * Add doc * Modify and change location of the code. * Small fix * Try to fix an alert * Try to fix an alert * Modify based on suggestions * Use INT_MAX * Modify based on suggestions. * Modify based on suggestions. 2020-02-20Do not use local Redistribute for electrostatic solver (#731)

Remi Lehe 1-0/+7 2020-02-19doc install yt on Summit (#729)

MaxThevenet 2-3/+18 * doc install yt on Summit * eol 2020-02-19avoid duplicate tests and plot less often (#726)

MaxThevenet 13-149/+11 * avoid duplicate tests and plot less often * fix tests I broke when trying to save plotfiles 2020-02-19[mini-PR] when a cufft error occurs, print a meaningful error message (#728)

Luca Fedeli 2-6/+55 * added method to translate cufft errors * fixed style * bug fixing 2020-02-18Galilean PSATD with shift (#704)

Olga Shapoval 28-60/+572 * Read Galilean velocity * Prepare structures for Galilean solver * Started implementing Galilean equations * Analytical limits for X1, X2, X3, X4 coefficients added * Slight changes added * Added Galilean position pusher * Scale galilean velocity * Remove unneeded Abort * Fix Galilean pusher * Allocate Theta2 array * Fix definition of coefficients * Increase guard cells for Galilean * Add guard cell in particle exchange * Type corrected * v_gal added to warpx_current_deposition * v_gal added to WarpXParticleContainer.H * Bug fixed - update particle x-position over one time step * Fix issues with merge from dev * Preparation for merging dev into galilean. * Adding galilean shift * Implemented galilean shift * Changed method's name from GalileanShift to ShiftGalileanBoundary * Added doxygen string for ShiftGalileanBoundary * Removed never used method LowerCornerWithCentering * Removed temporary comments * Removed dt as a variable from DepositCharge method and its dependencies * Converted tab to spaces * Removed EOL white space * Add documentation and automated tests * Fix compilation error * Add automated test * Update automated test * Removed temporary used galilean shift * Removed temporary used particle's push for Galilean PSATD * Removed unused statement * Remove EOL white space. * Added zero shift for LowerCorner in RZ geometry * Minor changes to Galilean implementation * Modifications for GPU * Fix typo Co-authored-by: Remi Lehe <remi.lehe@normalesup.org> 2020-02-18README: Update Badged to `master` (#725)

Axel Huebl 3-4/+3 * README: Update Badged to `master` Update the badges to check the `master` branch as development branch. * Docs: More dev->master updates - release workflow - contribution guide link 2020-02-15Xi precision (#719)

MaxThevenet 5-105/+110 * replace xi by xi*c*c, which can be represented by single precision * replace xi with xi*c*c in QED kernel * typo * Update Source/FieldSolver/WarpX_QED_K.H Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja> * add bunch of _rt * typo, didn't compile in 2d * Apply suggestions from code review Control parameter name update. Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> 2020-02-15Analysis: Fix Warnings (#722)

Axel Huebl 5-9/+2 Fix a couple of unused imports and unreachable statements. 2020-02-13moving dcomp++ outside MFIter loop (#711)

Revathi Jambunathan 1-9/+4 * moving dcomp++ outside MFIter loop * cleaning * fixing setVal syntax 2020-02-12update release tag in the code (#706)

MaxThevenet 3-3/+3 2020-02-12Docs: Fix Link Format (#710)

Axel Huebl 1-1/+1 Fix an ill-formatted .rst link 2020-02-11Add do_not_gather. (#705)

Yinjian Zhao 3-1/+8 2020-02-11openPMD: Add GNUmakefile Default (#708)

Axel Huebl 1-0/+1 Add a new entry in `GNUmakefile` for openPMD support. Default stays as before to false. This file is currently been modified in spack packages to adjust defaults of build variants. 2020-02-11Remove all mentions of the dev branch (#707)

Remi Lehe 8-32/+23 2020-02-11openPMD-api: One Series at a Time (#701)

Axel Huebl 1-0/+4 Make sure that only one Series is open at a time in case `Init` is called again. In previous logic, at the moment of assignment of a new Series, the old and the new `openPMD::Series`` were briefly active for a short time. ADIOS1 does not support this and its anyway not what we want to do here. Discovered by Junmin. Co-authored-by: guj <guj@users.noreply.github.com> 2020-02-11Add automated test for the electrostatic code (#700)

Remi Lehe 2-0/+43 * Create inputs * Add electrostatic automated test * Rename inputs to inputs_3d * use inputs_3d as name for input file Co-authored-by: dbizzozero <58712693+dbizzozero@users.noreply.github.com> Co-authored-by: MaxThevenet <mthevenet@lbl.gov> 2020-02-11openPMD: Avoid Writing Last Step Twice

Junmin Gu 1-1/+4 Fix logic issue in electro-magnetic step, which causes the last step to be written twice to openPMD-api. Found by Junmin. 2020-02-11Remove compilation of Fortran files in EM mode

Remi Lehe 2-3/+7 2020-02-11AMReX will remove AMREX_DEVICE_COMPILE soon because of DPC++. So we now ↵

Weiqun Zhang 3-12/+12 need to use __CUDA_ARCH__ and __HIP_DEVICE_COMPILE__ 2020-02-10Langmuir Analysis: absolute dfloat to 0

Axel Huebl 2-4/+7 2020-02-10Python Compile in Single Precision

Axel Huebl 4-14/+28 2020-02-10CI: Single Precision Tests

Axel Huebl 1-0/+36 Add a Langmuir 2D & 3D case with single precision. 2020-02-10wp_parser::nvars is not needed

Weiqun Zhang 3-7/+0 2020-02-10Change back.

Yinjian Zhao 2-7/+4 2020-02-10template Parser so that it works for any number of variables

Weiqun Zhang 24-288/+196 2020-02-10mention yt installation script in doc

MaxThevenet 1-0/+1 2020-02-10Correct compilation parameter DIM=

Remi Lehe 1-1/+1 2020-02-10using continue instead of the incorrect return if np==0 in BTD Particle ↵

RevathiJambunathan 1-2/+2 Buffer addition 2020-02-10Improve documentation on how to install yt

Remi Lehe 1-14/+2 2020-02-09Travis: Pip Instead of Conda, Caches

Axel Huebl 1-8/+15 Use system-package manager python3 and pip to install dependencies instead of relying on an additional conda install. 2020-02-07Update Docs/source/visualization/reduced_diags.rst

Yinjian Zhao 1-1/+1 Co-Authored-By: MaxThevenet <mthevenet@lbl.gov> 2020-02-07Documentation

Yinjian Zhao 1-1/+1 2020-02-07Documentation

Yinjian Zhao 2-13/+11 2020-02-07add some const

Andrew Myers 1-5/+5 2020-02-07Minor

Yinjian Zhao 1-2/+2 2020-02-07Add aux1File = Tools/read_raw_data.py.

Yinjian Zhao 1-0/+1 2020-02-07Use .

Yinjian Zhao 1-4/+5 2020-02-07Update Tools/read_raw_data.py

MaxThevenet 1-1/+1 2020-02-07Update Tools/read_raw_data.py

MaxThevenet 1-1/+1


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