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* Clang Tidy: add several modernize checks
* eliminate file included in commit by mistake
* fix bug
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* Build System: Add 1D Geometry
* test PR
* test PR
* 1D cartesian yee algorithm
* fixed typo
* Fixes for PML
* 1D support related multiple changes
* Fix compilation
* change 1D to 1D_Z
* 1D Field Gather and typo fix
* 1D Charge Deposition
* Particle Pusher
* multiple changes related to 1D
* 1D diagnostics and initialization
* PlasmaInjector and PEC fixes for 1D
* clean-up delete diags file
* mobility 1D laser particle and bilinear filter
* deleted diags files
* update laser particle weight formula
* delete diags files
* Azure: Add 1D Cartesian Runner
* 1D fixes for FieldProbe
* Update Docs/source/developers/dimensionality.rst
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* 1d laser injection and langmuir test input files
* 1d tests
* clean up : delete print statements
* analyse simulation result for laser injection and Langmuir tests
* EOL
* delete input files for which there are no automated tests
* delete input files for which there are no automated tests
* add ignore_unused to remove warnings
* remove space
* Fix compilation issues
* fix error : macro name must be an identifier
* Small bug fix
* cleanup Python script for analysis
* bug fix
* bug fix
* Update ParticleProbe: Check 1D in-domain
* Update Source/Make.WarpX
* Update .azure-pipelines.yml
* Add USE_OPENPMD=FALSE to .azure-pipeline.yml
* resolve conflict
* resolve conflict
* fix typo
* Correct out-of-bound access
* Fix Particle BC in WarpXParticleContainer and correct path to checksumAPI in python analysis scripts
* EOL
* Fix bug : accessing out of bound index of cell in 1D
* remove 1d test for cartesian3d
* Fix CI check
* Slight style change
* Address review comments
* Fix GPU compilation Filter.cpp
* Fix CI
* Fix Indentation
* Address review comments
* More consistent ifdef for dimension bigger than 1
* Update Examples/Tests/Langmuir/analysis_langmuir_multi_1d.py
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update GNUmakefile
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Regression/prepare_file_ci.py
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianCKCAlgorithm.H
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianNodalAlgorithm.H
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Filter/Filter.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Filter/Filter.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Filter/Filter.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Filter/Filter.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Initialization/PlasmaInjector.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update Source/Initialization/PlasmaInjector.cpp
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* add comment inline to explain twice push_back
* Add amrex::Abort for NCIGodfreyFilter
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Prabhat Kumar <prabhatkumar@kraken.dhcp.lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
Co-authored-by: Remi Lehe <rlehe@lbl.gov>
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* initial tests with IWYU
* added a couple of forward declarations
* used iwyu on more files
* progress
* used iwyu on more files
* progress with iwyu
* progress with iwyu
* fixed bug
* progress with iwyu
* progress with IWYU
* progress with IWYU
* fixed bug
* fixed bug
* progress with IWYU
* progress with IWYU + use forward declarations in WarpX.H
* first try with .def files
* fix bugs
* progress with IWYU
* progress with IWYU
* progress with iwyu
* correct copyright
* fixed bug
* fixed bugs
* fix missing include
* fixed bug
* fix bug
* fix bug introduced during last bugfix
* use iwyu on newly added files
* add space
* fix bug
* fix missing include
* fix missing include
* fix missing include
* fixed bugs
* fixed bug
* attempt at fixing issue with math functions
* added missing include
* fixed missing include
* using _fwd.H
* fixed bug
* progress with iwyu
* update AMReX branch
* enforce alphabetic order
* progress with iwyu
* use right version of amrex
* use right version of amrex for tests
* fixed bug
* fix another bug
* fix missing include
* fix missing include
* fix missing include
* updated amrex
* initial work to document new include strategy
* updated documentation
* Fix rst & private includes
* Remove accidentially added files
* Fix rst code blocks
* one more rst block
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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factor (#1969)
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being unreachable statements (#1957)
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* Adding macro-E Push and new file
* Add macroEvolveE, call it, and include algo selection in utils
* fix eol
* Fixing bug in macroE for sigma method 1
* changing MacroEvolveE to MacroscopicEvolveE
* add class for macroscopicproperties and an object in WarpX class
* fix eol
* adding templated ckc call with comment that EvolveE is same for yee and ckc
* add header file pointing to ckc algorithm
* adding obejct m_macroscopic_properties to access sigma,eps,mu
* some cleaning
* Adding comments
* adding documentation
* spelling wandroff to wendroff
* fixing eol
* eol
* const in the right place. Thanks bot!
* profiler for macroscopic evolveE
* MultiFab macroproperties with constant init, templated macroEvolveE,
* call macroparameter init
* eol fix
* add parser for macroscopic properties
* fix eol
* adding input file
* __device__ lambda cannot be private in class
* fix grown tilebox declaration for init data
* [skip ci] some more merge conflicts
* some comments
* removing redundant calls to Macroscopic EvolveE
* [skip ci] fix growntilebox for initializing macro mf
* clean and fix BackwardEuler call for ckc
* commenting out old alpha and beta implementations
* temporarily commiting local changes with calls in Interp.
* fixing a typo
* clean and add documentation
* remove the test input file
* fix typo
* eol fix
* Update Docs/source/running_cpp/parameters.rst
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
* PR suggestions
* Update Source/FieldSolver/WarpXPushFieldsEM.cpp
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
* removing unnecessary includes
* adding 2D initialization for stag arrays
* removing init_style input parameter for material properties
* eol fix
* Adding dE/dt eq curl of (B/mu)
* PhysConst ep0 and mu0
* Add functor for field access for macro and vacuum (B/mu)
* fix eol
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/FieldAccessorFunctors.H
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Apply suggestions from code review
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Update Source/FieldSolver/FiniteDifferenceSolver/FiniteDifferenceAlgorithms/CartesianCKCAlgorithm.H
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* Apply suggestions from code review
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
* fixing compilation errors and removing Gpu ManagedVector
Co-authored-by: Andy Nonaka <AJNonaka@lbl.gov>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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openMP+MPI, double precision, no advanced solvers, no QED, native output) (#1263)
This PR should fix almost all the compilation warnings in the default configuration (DIM=3, openMP+MPI, double precision, no advanced solvers, no QED, native output...). Or at least it does that on my system (my compiler is `g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0` ).
I have just two residual warnings:
### 1
```
[ 89%] Building CXX object CMakeFiles/WarpX.dir/Source/Parser/wp_parser.lex.cpp.o
wp_parser.lex.c:1356:17: warning: ‘void yyunput(int, char*)’ defined but not used [-Wunused-function]
```
I don't know if `yyunput(int, char*)` is there for a reason, even if it is not used. So I didn't do anything.
### 2
```
[ 96%] Building CXX object CMakeFiles/WarpX.dir/Source/Utils/CoarsenIO.cpp.o
/home/luca/Projects/warpx_dir/WarpX/Source/Particles/WarpXParticleContainer.cpp: In member function ‘void WarpXParticleContainer::AddNParticles(int, int, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, const ParticleReal*, int, const ParticleReal*, int, int)’:
/home/luca/Projects/warpx_dir/WarpX/Source/Particles/WarpXParticleContainer.cpp:102:44: warning: unused parameter ‘nattr’ [-Wunused-parameter]
102 | int nattr, const ParticleReal* attr, int uniqueparticles, int id)
```
The first line of `AddNParticles` is `BL_ASSERT(nattr == 1); //! @fixme nattr is unused below: false sense of safety` . So I thought that there might be something to fix here and I didn't do anything.
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This PR fixes the source of several compilation warnings.
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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Remove unnecessary semicolons (fix compiler warnings).
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* Cleaner calculation of the simulation timestep
* Fix compilation errors
* Remove specification of CKC solver in PSATD test
* Correct calculation of dt
* Fix compilation error
* Cleaner calculation of the simulation timestep
* Fix compilation errors
* Remove specification of CKC solver in PSATD test
* Correct calculation of dt
* Fix compilation error
* Cleanup for cylindrical
* Change input of automated tests to preserve previous results
* Fix import statement for cylindrical
* Preserve dt for PML test
* Move function documentation to WarpX.H
* Update CMakeList
* Update CFL in some tests
* Apply suggestions from code review
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Fix compilation errors
* Revert "Fix compilation errors"
This reverts commit 56ef67f228269b266876629f49789d3afdbbc00b.
* Fix compilation error
* Add cmath headers
Add directly used header files.
* Fix Include Order
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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Clean up `amrex::Real` literals (aka "numbers"). This avoids
calculating a line in double precision and casting it down to
`Real` on assignment.
Also fixes some formatting issues.
(Commit credited to Remi.)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
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Luca Fedeli
Prabhat Kumar
Revathi Jambunathan
Phil Miller
WeiqunZhang
Axel Huebl
Remi Lehe
